Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 2.7e-245 851.7 460 100.0
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 8.7e-95 351.7 484 53.7
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.3e-69 268.1 471 44.4
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.4e-60 238.0 486 40.3
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.1e-57 228.4 469 39.4
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 5.2e-55 219.5 458 38.9
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.3e-53 212.6 477 42.1
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.0e-50 205.3 461 40.6
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 1.3e-50 204.9 442 36.4
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.1e-48 197.6 428 42.3
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 3.6e-48 196.8 491 37.7
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.0e-47 195.3 432 39.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.0e-47 195.3 454 37.7
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.4e-47 194.9 436 37.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 8.8e-47 192.2 466 40.3
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.7e-45 186.8 434 36.9
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.1e-44 183.7 475 37.7
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.1e-44 183.3 424 38.4
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.2e-43 181.8 416 38.5
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.2e-43 181.8 397 38.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.5e-43 179.9 433 37.0
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.3e-42 178.3 496 35.7
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.7e-42 177.9 442 37.6
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.7e-42 177.9 424 35.6
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.5e-41 174.9 467 35.1
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.9e-41 174.5 420 39.3
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.3e-41 173.7 472 39.6
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 3.3e-41 173.7 437 38.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 4.2e-41 173.3 376 39.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 5.5e-41 172.9 447 37.4
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 5.5e-41 172.9 447 37.4
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 8.0e-40 169.1 448 35.3
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.3e-39 167.5 396 36.4
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.3e-39 167.5 452 37.2
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 5.2e-39 166.4 464 36.0
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 3.4e-38 163.7 441 35.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 5.7e-38 162.9 451 35.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 7.5e-38 162.5 438 37.0
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.7e-37 161.4 501 36.1
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.3e-37 159.1 398 38.7
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.1e-36 158.7 512 34.4
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.4e-36 158.3 463 34.1
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.6e-35 154.8 381 37.5
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 7.8e-35 152.5 433 36.5
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.9e-34 150.6 467 35.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 6.6e-34 149.4 417 35.5
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-33 148.3 378 36.0
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 2.5e-33 147.5 470 38.7
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 2.5e-33 147.5 470 38.7
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 3.3e-33 147.1 403 35.2
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 3.3e-33 147.1 403 35.2
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 4.3e-33 146.7 451 33.5
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 5.6e-33 146.4 489 30.9
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.6e-32 144.8 473 32.6
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.6e-32 144.8 472 34.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 2.8e-32 144.1 564 33.0
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.8e-32 144.1 385 35.3
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.0e-31 142.1 476 35.5
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-31 141.4 469 33.3
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 8.9e-31 139.0 465 30.8
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 8.9e-31 139.0 395 34.7
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.2e-30 138.7 395 34.4
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.5e-30 138.3 555 29.4
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.5e-30 138.3 467 36.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 2.0e-30 137.9 482 29.3
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 2.6e-30 137.5 549 29.3
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 3.4e-30 137.1 409 33.3
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 4.4e-30 136.7 499 30.7
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 5.8e-30 136.3 369 35.5
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 9.8e-30 135.6 368 35.1
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.2e-29 134.4 471 34.0
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 3.7e-29 133.7 448 32.1
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 4.9e-29 133.3 461 31.0
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.4e-28 131.7 372 34.1
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-28 131.3 466 31.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 3.2e-28 130.6 383 35.5
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 7.0e-28 129.4 424 31.8
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 9.2e-28 129.0 503 29.8
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.0e-27 127.9 320 36.6
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.7e-27 127.5 450 32.2
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 7.8e-27 125.9 400 32.8
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 7.8e-27 125.9 369 32.5
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.0e-26 125.6 499 30.5
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.3e-26 125.2 424 32.5
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.7e-26 124.8 328 36.0
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.7e-26 124.8 504 30.6
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.3e-26 124.4 421 33.7
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 9.5e-25 119.0 475 30.9
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 9.5e-25 119.0 416 32.7
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.6e-24 117.1 319 35.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 4.7e-24 116.7 593 30.0
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.7e-24 116.7 279 36.6
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.2e-24 116.3 476 31.5
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.0e-24 115.9 319 37.9
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.3e-23 114.4 421 30.2
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.0e-23 113.6 470 30.0
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.0e-23 113.6 359 32.3
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.2e-22 112.1 446 30.9
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.5e-22 111.7 455 30.8
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.5e-22 111.7 519 29.3
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.0e-22 111.3 510 30.2
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.6e-22 110.9 328 34.1
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.6e-22 110.9 275 36.4
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 3.4e-22 110.5 434 32.3
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.4e-22 110.2 547 31.8
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.4e-22 110.2 167 44.3
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 7.5e-22 109.4 545 31.4
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.4e-20 104.4 491 28.1
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 7.0e-20 102.8 520 32.3
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.2e-20 102.4 512 28.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.6e-19 101.7 419 31.0
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.6e-19 101.7 242 37.2
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.7e-19 100.9 499 29.1
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 4.6e-19 100.1 532 28.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 7.8e-19 99.4 525 30.9
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.8e-19 99.4 363 31.1
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.0e-18 99.0 576 27.1
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.3e-18 98.6 429 32.9
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.3e-18 97.8 503 28.0
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.3e-18 97.8 503 28.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.0e-18 97.4 502 27.9
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 3.0e-18 97.4 402 29.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 3.9e-18 97.1 526 28.9
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 5.0e-18 96.7 415 30.6
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 8.6e-18 95.9 553 30.2
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.5e-17 95.1 523 30.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.5e-17 94.4 527 27.1
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 5.6e-17 93.2 177 40.7
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.3e-17 92.8 202 38.1
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 6.2e-16 89.7 536 27.8
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 8.1e-16 89.4 479 28.6
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.1e-16 89.4 443 28.0
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.4e-15 88.6 526 29.3
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.4e-15 88.6 433 28.4
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 6.8e-15 86.3 246 35.4
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.2e-14 85.5 571 28.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 9.9e-14 82.4 498 27.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.3e-13 82.0 355 30.1
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.2e-13 81.3 409 28.6
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.9e-13 80.9 393 29.3
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.7e-13 80.5 584 28.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 3.7e-13 80.5 385 29.9
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 4.9e-13 80.1 177 37.9
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.1e-12 79.0 513 26.7
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.9e-12 78.2 401 29.2
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.9e-12 78.2 179 36.9
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.1e-12 77.0 369 30.6
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 9.2e-12 75.9 127 44.9
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 9.2e-12 75.9 363 30.0
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.5e-11 73.9 67 56.7
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.0e-10 72.4 371 27.8
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.3e-10 72.0 520 25.8
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.0e-10 70.9 363 29.8
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 5.1e-10 70.1 375 27.5
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 1.1e-09 68.9 369 27.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.1e-09 68.9 325 29.5
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-09 68.2 83 53.0
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.6e-09 66.6 366 27.0
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 7.3e-09 66.2 387 26.4
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.3e-09 66.2 84 51.2
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.6e-08 65.1 163 33.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 1.6e-08 65.1 417 27.1
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 2.1e-08 64.7 387 27.4
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 8.1e-08 62.8 383 29.0
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.4e-07 62.0 362 24.0
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.2e-06 58.9 508 23.8
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.5e-06 58.5 111 45.0
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.0e-06 58.2 453 26.9
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 5.8e-06 56.6 305 27.5


User provided reference genes

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