Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.9e-97 358.6 189 100.0
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 4.2e-80 301.6 186 82.8
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 9.5e-80 300.4 187 81.3
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.6e-79 299.7 192 80.2
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 3.6e-79 298.5 191 80.6
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.0e-78 297.0 175 86.3
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.3e-78 295.8 191 79.6
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.6e-77 292.4 182 82.4
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 3.4e-77 292.0 188 79.3
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 4.4e-77 291.6 188 79.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 5.7e-77 291.2 189 81.5
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 5.7e-77 291.2 191 79.1
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 5.7e-77 291.2 191 79.1
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.7e-77 291.2 179 82.1
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.7e-76 289.7 188 78.7
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.2e-76 289.3 182 81.3
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.7e-76 288.5 183 79.8
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 4.9e-76 288.1 174 83.9
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 4.9e-76 288.1 180 80.6
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 6.3e-76 287.7 179 82.1
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 6.3e-76 287.7 180 78.9
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.3e-76 287.7 188 78.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.1e-75 287.0 168 85.7
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.1e-75 287.0 185 77.8
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.4e-75 286.6 179 81.0
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.4e-75 286.6 179 81.0
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.8e-75 286.2 175 82.3
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 2.4e-75 285.8 188 78.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 3.1e-75 285.4 168 83.3
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 3.1e-75 285.4 185 78.9
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.1e-75 285.0 184 77.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.1e-75 285.0 184 77.7
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.1e-75 285.0 179 78.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 5.4e-75 284.6 185 77.3
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.4e-75 284.6 188 77.7
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 5.4e-75 284.6 209 73.2
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 5.4e-75 284.6 189 77.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 7.0e-75 284.3 184 77.2
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 7.0e-75 284.3 183 78.1
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.0e-75 284.3 179 81.0
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 9.2e-75 283.9 182 78.0
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 9.2e-75 283.9 185 78.9
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 9.2e-75 283.9 180 79.4
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 1.2e-74 283.5 183 77.6
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.2e-74 283.5 174 82.8
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.6e-74 283.1 193 77.2
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.0e-74 282.7 187 77.5
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.7e-74 282.3 180 79.4
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 3.5e-74 282.0 175 79.4
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 3.5e-74 282.0 174 80.5
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.5e-74 282.0 183 78.7
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.5e-74 282.0 193 77.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.5e-74 282.0 193 77.7
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.5e-74 281.6 184 77.7
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 4.5e-74 281.6 183 78.7
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 4.5e-74 281.6 184 78.3
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.5e-74 281.6 168 83.9
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 7.8e-74 280.8 168 83.3
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 7.8e-74 280.8 189 76.7
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 7.8e-74 280.8 182 80.2
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 7.8e-74 280.8 188 80.3
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.0e-73 280.4 191 75.4
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.0e-73 280.4 186 76.9
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.0e-73 280.4 174 82.8
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.3e-73 280.0 169 82.8
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 1.3e-73 280.0 169 82.2
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.7e-73 279.6 183 78.1
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.7e-73 279.6 183 78.1
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.7e-73 279.6 182 79.1
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.3e-73 279.3 173 82.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-73 279.3 182 79.1
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.3e-73 279.3 186 76.9
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.9e-73 278.9 188 77.1
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 5.0e-73 278.1 194 76.3
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 5.0e-73 278.1 173 79.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 6.6e-73 277.7 188 75.0
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 6.6e-73 277.7 184 78.3
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 6.6e-73 277.7 186 75.3
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.1e-72 276.9 173 80.9
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.1e-72 276.9 173 80.9
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.9e-72 276.2 188 76.1
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.9e-72 276.2 186 75.3
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.9e-72 276.2 183 77.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.9e-72 276.2 183 77.0
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.5e-72 275.8 192 73.4
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 4.3e-72 275.0 190 76.3
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 4.3e-72 275.0 186 74.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 7.3e-72 274.2 188 76.1
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 9.5e-72 273.9 194 75.8
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.2e-71 273.5 190 75.8
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.6e-71 273.1 174 79.3
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.6e-71 273.1 178 77.5
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.6e-71 271.9 169 79.3
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 4.7e-71 271.6 183 77.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 8.0e-71 270.8 169 79.3
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.0e-70 270.4 183 75.4
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.0e-70 270.4 183 75.4
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.0e-70 270.4 183 75.4
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.0e-70 270.4 183 75.4
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.4e-70 270.0 169 78.7
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.4e-70 270.0 169 78.7
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.2e-69 266.9 182 76.4
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.0e-69 266.2 226 65.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.7e-68 263.1 188 72.3
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.7e-68 261.9 215 67.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.1e-67 260.4 235 63.0
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 4.1e-67 258.5 154 85.1
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 5.4e-67 258.1 160 82.5
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 7.0e-67 257.7 223 61.9
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.9e-64 249.6 174 74.7
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.8e-63 245.7 183 69.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 3.6e-63 245.4 178 69.7
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 6.2e-63 244.6 178 68.5
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.0e-63 244.2 188 69.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.1e-62 243.8 159 79.9
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 5.2e-62 241.5 229 57.6
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 6.8e-62 241.1 188 69.7
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.7e-60 235.3 144 81.9
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-57 226.1 182 67.6
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 4.3e-56 221.9 135 83.0
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 5.6e-56 221.5 131 82.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 6.2e-55 218.0 144 75.0
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.1e-54 217.2 175 61.1
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.3e-54 216.1 125 84.0
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 3.1e-54 215.7 173 61.8
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.2e-51 205.7 127 81.1
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 4.1e-51 205.3 133 76.7
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.1e-48 197.2 124 79.0
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 4.3e-48 195.3 133 74.4
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 4.3e-48 195.3 135 74.1
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.2e-47 193.7 122 82.8
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 6.2e-47 191.4 110 87.3
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.4e-43 179.5 201 55.2
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-41 172.6 102 83.3
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-40 170.2 109 78.9
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.3e-40 168.7 117 75.2
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.5e-37 160.2 108 74.1
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.6e-37 157.9 99 77.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.2e-34 150.6 171 43.3
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.0e-34 148.3 98 81.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.6e-31 140.2 102 69.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-31 139.4 82 81.7
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.6e-31 139.0 169 42.0
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 6.9e-30 134.8 185 37.8
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 8.4e-28 127.9 85 77.6
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.4e-27 127.1 161 41.0
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 7.1e-27 124.8 85 75.3
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.7e-26 122.9 104 66.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.6e-26 122.1 99 62.6
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 6.0e-26 121.7 88 64.8
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 3.0e-25 119.4 75 76.0
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 3.0e-25 119.4 101 65.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.9e-18 94.7 64 70.3
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.1e-14 82.8 53 73.6
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.2e-13 80.9 47 87.2
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.3e-11 71.2 113 42.5
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-10 70.9 113 42.5
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-10 70.9 113 42.5
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.7e-10 69.7 113 42.5
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.6e-10 68.9 113 41.6
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 3.9e-09 65.9 115 40.9
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 5.7e-08 62.0 60 56.7
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.6e-07 60.5 36 75.0
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 1.1e-06 57.8 53 60.4


User provided reference genes

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