Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.1e-45 186.4 101 100.0
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 2.4e-13 79.0 103 52.4
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 4.1e-13 78.2 102 51.0
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 4.5e-12 74.7 102 52.0
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.0e-11 73.6 103 48.5
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 1.0e-11 73.6 101 51.5
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 1.3e-11 73.2 102 51.0
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.3e-11 73.2 99 51.5
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.7e-11 72.8 104 51.0
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.7e-11 72.8 103 47.6
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 2.2e-11 72.4 97 50.5
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.9e-11 72.0 103 49.5
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 2.9e-11 72.0 101 50.5
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.9e-11 72.0 100 52.0
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 2.9e-11 72.0 100 49.0
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 3.8e-11 71.6 101 49.5
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 3.8e-11 71.6 99 50.5
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 5.0e-11 71.2 100 49.0
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 5.0e-11 71.2 101 45.5
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 6.5e-11 70.9 102 50.0
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 8.5e-11 70.5 101 52.5
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 8.5e-11 70.5 101 51.5
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 8.5e-11 70.5 101 44.6
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.1e-10 70.1 99 48.5
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-10 69.7 97 46.4
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.5e-10 69.7 100 52.0
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.5e-10 69.7 100 53.0
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.5e-10 69.7 101 46.5
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 1.9e-10 69.3 101 50.5
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.9e-10 69.3 101 46.5
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.9e-10 69.3 103 46.6
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.5e-10 68.9 102 48.0
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.5e-10 68.9 101 47.5
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.5e-10 68.9 101 45.5
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 2.5e-10 68.9 100 45.0
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 3.2e-10 68.6 97 49.5
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 3.2e-10 68.6 101 48.5
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.2e-10 68.6 97 46.4
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 3.2e-10 68.6 101 44.6
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 4.2e-10 68.2 96 50.0
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 7.2e-10 67.4 101 43.6
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 7.2e-10 67.4 99 48.5
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 9.4e-10 67.0 101 45.5
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.2e-09 66.6 101 45.5
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.6e-09 66.2 102 47.1
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.6e-09 66.2 102 51.0
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.6e-09 66.2 101 43.6
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.6e-09 66.2 101 44.6
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.1e-09 65.9 102 45.1
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.7e-09 65.5 99 47.5
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.7e-09 65.5 100 50.0
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 3.6e-09 65.1 100 50.0
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 4.7e-09 64.7 94 47.9
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 6.1e-09 64.3 94 53.2
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 6.1e-09 64.3 102 45.1
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.0e-08 63.5 102 45.1
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.4e-08 63.2 101 42.6
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.4e-08 63.2 99 45.5
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.8e-08 62.8 101 44.6
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.8e-08 62.8 99 45.5
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 2.3e-08 62.4 97 51.5
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.3e-08 62.4 103 44.7
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 4.0e-08 61.6 97 50.5
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 5.2e-08 61.2 102 49.0
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 8.8e-08 60.5 101 43.6
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 8.8e-08 60.5 94 43.6
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 1.1e-07 60.1 101 41.6
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 2.0e-07 59.3 94 48.9
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.0e-07 59.3 101 43.6
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 2.6e-07 58.9 99 47.5
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 2.6e-07 58.9 98 43.9
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 4.4e-07 58.2 94 46.8
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 7.5e-07 57.4 103 45.6
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 9.7e-07 57.0 102 48.0
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 9.7e-07 57.0 102 45.1
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 1.7e-06 56.2 95 44.2
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.7e-06 56.2 94 44.7
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 2.2e-06 55.8 104 45.2
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 8.2e-06 53.9 99 41.4


User provided reference genes

Program Settings