Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 3.6e-261 904.4 470 100.0
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 9.1e-116 421.4 322 69.3
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 4.2e-113 412.5 417 55.4
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.1e-112 408.7 419 55.1
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 8.0e-112 408.3 425 54.8
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.0e-111 407.9 419 55.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 5.2e-111 405.6 425 53.9
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 6.8e-111 405.2 428 53.0
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.0e-110 403.7 404 55.7
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 2.8e-109 399.8 421 54.6
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 6.3e-109 398.7 422 54.0
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 6.3e-109 398.7 454 53.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.4e-108 397.5 422 55.2
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.8e-108 397.1 439 53.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 3.1e-108 396.4 419 53.7
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 4.1e-108 396.0 404 55.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.4e-108 395.6 404 54.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 5.4e-108 395.6 419 54.2
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.6e-107 394.0 430 53.5
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.0e-107 393.7 431 52.9
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 5.9e-107 392.1 408 56.4
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.0e-106 391.3 428 52.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.3e-106 390.2 428 52.3
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 6.6e-106 388.7 413 53.3
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.9e-105 387.1 423 53.0
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.9e-105 387.1 426 53.5
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 4.3e-105 386.0 420 52.1
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 3.6e-104 382.9 425 51.1
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 3.6e-104 382.9 429 52.0
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.7e-104 382.5 401 54.6
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.0e-103 381.3 422 50.9
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.4e-103 380.9 418 53.6
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.4e-103 380.9 419 52.5
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.1e-103 379.8 431 52.0
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 6.8e-103 378.6 393 55.0
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.2e-102 377.9 339 59.6
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.0e-102 377.1 423 51.8
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 3.4e-102 376.3 418 52.2
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 9.8e-102 374.8 435 50.8
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.7e-101 374.0 413 51.6
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 4.9e-101 372.5 426 50.2
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 4.9e-101 372.5 442 51.1
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 6.4e-101 372.1 421 52.7
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 8.3e-101 371.7 423 50.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.1e-100 371.3 410 50.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.9e-100 370.5 406 53.2
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 2.4e-100 370.2 335 59.7
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.1e-100 369.4 429 50.1
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 4.1e-100 369.4 413 51.3
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.2e-99 367.9 426 50.9
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.7e-99 366.7 320 60.0
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 7.8e-99 365.2 411 50.6
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 5.0e-98 362.5 428 49.8
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 6.6e-98 362.1 420 48.3
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.5e-97 360.9 344 56.7
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.5e-97 360.9 419 50.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.5e-97 360.9 420 48.1
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 4.3e-97 359.4 421 49.4
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 5.6e-97 359.0 399 52.6
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.3e-97 358.6 432 49.1
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.2e-96 357.8 425 49.4
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.2e-96 357.8 426 48.8
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.6e-96 357.5 425 49.2
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.6e-96 357.5 418 48.1
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.1e-96 357.1 419 49.2
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 3.6e-96 356.3 430 48.8
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 3.6e-96 356.3 430 48.8
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 4.7e-96 355.9 430 48.8
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 6.2e-96 355.5 425 47.5
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.4e-95 354.4 334 56.6
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.8e-95 354.0 408 51.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.0e-95 352.8 433 46.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-94 350.9 410 50.0
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.4e-94 349.7 321 59.5
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 9.8e-94 348.2 410 50.0
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 7.1e-92 342.0 323 57.9
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.0e-90 338.2 410 49.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 4.3e-89 332.8 319 56.4
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 9.5e-89 331.6 419 48.4
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.6e-88 330.9 428 47.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.8e-88 330.1 333 54.7
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.1e-87 328.2 419 48.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.1e-87 328.2 254 66.1
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 6.4e-85 318.9 354 50.0
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 8.3e-85 318.5 290 57.6
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 7.1e-84 315.5 418 46.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 7.1e-84 315.5 411 46.5
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 9.2e-84 315.1 346 51.2
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.1e-81 308.1 407 45.7
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.9e-81 307.4 517 38.9
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.3e-81 306.2 292 55.5
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 2.2e-77 293.9 653 34.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 6.6e-74 282.3 422 44.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.5e-73 281.2 477 39.6
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.8e-71 274.2 277 53.4
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.4e-71 273.9 340 46.8
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 5.3e-71 272.7 462 42.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 9.0e-71 271.9 335 46.3
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.0e-70 270.8 340 49.1
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.4e-70 270.0 266 54.5
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.7e-69 267.7 482 38.6
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.2e-67 261.5 357 46.5
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 5.1e-66 256.1 366 42.9
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.5e-65 254.6 424 41.0
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.4e-63 248.1 270 54.8
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 4.0e-63 246.5 338 45.0
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 6.9e-63 245.7 380 39.7
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 2.9e-61 240.4 228 57.0
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.9e-60 237.7 242 53.7
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 5.4e-60 236.1 265 52.8
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 4.8e-56 223.0 261 47.9
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 6.5e-53 212.6 169 63.9
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.1e-52 209.1 262 49.6
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.5e-49 201.4 296 42.2
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.1e-36 158.7 439 32.1
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.6e-35 154.8 413 30.8
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.3e-34 151.0 160 51.2
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.1e-34 149.8 249 41.4
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.3e-32 145.2 313 37.7
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 5.3e-31 139.8 386 32.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.3e-29 135.2 103 63.1
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.8e-21 107.1 156 46.2
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.5e-21 106.3 67 82.1
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-21 106.3 153 43.8
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.2e-18 96.7 73 65.8
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.7e-18 96.3 140 45.0
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 7.4e-17 92.8 127 44.1
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 8.2e-16 89.4 125 42.4
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-13 79.7 98 46.9
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-13 79.7 98 46.9
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-12 78.6 98 45.9
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.5e-12 77.8 83 50.6
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-11 75.1 105 43.8
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.6e-11 75.1 137 38.0
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 7.5e-09 66.2 139 38.1
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.4e-07 62.0 45 64.4
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.8e-07 61.6 103 44.7
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.2e-06 58.9 48 62.5


User provided reference genes

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