Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 9.5e-198 693.3 359 100.0
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 6.5e-130 468.0 345 72.5
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 8.8e-127 457.6 331 73.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.8e-127 457.6 344 71.8
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.0e-126 456.4 370 67.0
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.3e-125 453.8 349 70.8
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.3e-125 453.8 370 67.3
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 2.8e-125 452.6 323 73.4
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.1e-124 450.7 372 68.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.4e-124 450.3 344 70.3
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.4e-124 450.3 323 72.4
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.4e-124 449.5 345 70.4
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 2.4e-124 449.5 323 72.4
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.1e-124 448.7 372 65.3
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 2.6e-123 446.0 347 69.7
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 4.5e-123 445.3 339 71.1
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.0e-122 444.1 351 68.1
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.2e-122 443.0 350 68.6
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.2e-122 443.0 331 70.1
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.9e-122 442.6 350 68.9
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 2.9e-122 442.6 376 65.7
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.8e-122 442.2 347 68.9
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 5.0e-122 441.8 345 69.0
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 6.5e-122 441.4 341 68.9
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 8.5e-122 441.0 323 71.8
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.1e-121 440.7 325 72.9
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.5e-121 440.3 351 68.1
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.5e-121 440.3 351 68.1
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.5e-121 440.3 331 71.3
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.5e-121 440.3 322 72.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.5e-121 440.3 347 69.5
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.5e-121 439.5 351 68.1
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.5e-121 439.5 351 68.1
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 3.2e-121 439.1 344 68.3
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 3.2e-121 439.1 346 68.2
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 3.2e-121 439.1 330 71.8
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.2e-121 438.7 323 72.1
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 4.2e-121 438.7 325 72.3
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 4.2e-121 438.7 323 72.1
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 5.5e-121 438.3 323 73.1
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 5.5e-121 438.3 346 68.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 9.4e-121 437.6 323 72.1
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.2e-120 437.2 346 67.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.2e-120 437.2 346 67.9
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.6e-120 436.8 330 70.3
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.6e-120 436.8 323 71.5
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 2.1e-120 436.4 345 68.4
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 2.7e-120 436.0 341 69.8
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.7e-120 436.0 345 69.0
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 2.7e-120 436.0 346 68.2
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 4.7e-120 435.3 352 68.5
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 8.0e-120 434.5 338 68.0
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 8.0e-120 434.5 323 70.6
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 1.8e-119 433.3 323 71.5
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 2.3e-119 433.0 323 70.9
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 2.3e-119 433.0 323 70.9
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 3.0e-119 432.6 323 70.9
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.0e-119 432.2 319 72.4
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.0e-119 432.2 323 70.9
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.2e-119 431.8 347 67.1
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 5.2e-119 431.8 341 67.4
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.2e-118 430.6 323 70.3
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.0e-118 429.9 337 68.8
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 2.6e-118 429.5 323 70.9
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 2.6e-118 429.5 331 69.5
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 9.7e-118 427.6 319 71.5
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 9.7e-118 427.6 328 70.4
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.7e-117 426.8 337 68.2
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.8e-117 426.0 342 67.0
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 5.3e-116 421.8 319 69.9
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 7.0e-116 421.4 380 62.4
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 7.0e-116 421.4 344 66.0
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 9.1e-116 421.0 355 65.1
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.2e-115 420.6 337 66.2
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 2.7e-115 419.5 323 69.0
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.5e-115 419.1 344 65.7
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 1.9e-113 413.3 342 63.2
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.1e-112 409.8 321 66.7
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.1e-112 409.8 363 60.6
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 3.6e-112 409.1 408 57.8
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.3e-111 406.4 311 70.1
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.0e-111 405.6 361 63.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 1.5e-110 403.7 310 67.4
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.3e-109 400.6 313 68.7
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.7e-109 400.2 287 73.5
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.2e-109 399.8 316 69.3
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 7.0e-108 394.8 308 68.2
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.2e-107 394.0 351 64.4
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.9e-105 386.7 333 61.6
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 5.5e-105 385.2 310 65.5
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 5.2e-103 378.6 302 66.9
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 5.7e-102 375.2 323 63.8
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 5.7e-102 375.2 333 61.0
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.7e-99 366.3 299 66.2
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.3e-97 359.0 384 55.5
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 7.3e-97 358.2 309 60.2
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 9.5e-97 357.8 323 61.9
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.6e-96 357.1 232 76.3
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 5.2e-95 352.1 252 70.2
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 3.7e-93 345.9 322 59.0
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 8.6e-90 334.7 344 57.8
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.1e-89 334.3 242 71.1
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.0e-87 325.9 242 72.3
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 5.4e-84 315.5 255 63.9
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 7.8e-83 311.6 184 83.2
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.4e-76 290.8 317 52.1
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 2.0e-70 270.4 310 49.0
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.7e-69 267.3 314 48.7
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.6e-67 260.8 311 52.1
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 9.6e-65 251.5 243 56.8
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 4.8e-64 249.2 223 60.1
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.5e-62 244.2 192 69.3
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.4e-60 236.9 151 76.2
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.9e-57 227.3 187 65.8
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 7.6e-54 215.3 277 46.9
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.3e-53 214.5 220 54.5
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 1.1e-49 201.4 167 65.3
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 4.9e-45 186.0 130 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 6.5e-37 159.1 130 60.0
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.3e-34 150.6 116 66.4
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 3.0e-34 150.2 227 47.1
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 3.9e-34 149.8 160 55.0
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.1e-34 149.4 273 34.4
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 3.3e-33 146.7 217 41.9
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 7.7e-30 135.6 103 62.1
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.9e-29 133.7 85 72.9
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.8e-24 117.1 83 66.3
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 7.7e-22 109.0 121 54.5
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 5.7e-17 92.8 84 59.5
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.7e-17 92.0 54 75.9
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.7e-17 92.0 74 67.6
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.8e-15 87.8 62 67.7
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 2.0e-14 84.3 76 64.5
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.5e-12 76.3 57 57.9
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 4.7e-11 73.2 140 41.4
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 5.9e-06 56.2 56 51.8


User provided reference genes

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