Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.8e-241 839.0 459 100.0
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 5.6e-126 455.3 470 60.2
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 5.8e-123 445.3 479 60.3
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 2.5e-118 429.9 478 59.0
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.0e-116 422.5 479 56.4
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.2e-116 422.2 465 58.7
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.2e-116 422.2 465 59.1
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.8e-116 421.8 483 55.9
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.4e-115 419.1 480 55.8
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 5.8e-115 418.7 474 54.6
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.7e-114 417.2 468 56.8
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 3.8e-114 416.0 488 54.5
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.4e-114 415.2 468 56.6
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 5.4e-113 412.1 422 58.1
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 5.4e-113 412.1 476 55.3
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.3e-111 407.5 482 55.4
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.9e-111 406.0 489 54.2
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 9.6e-110 401.4 471 55.4
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.2e-109 401.0 463 55.5
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.1e-108 397.9 458 54.6
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 3.1e-108 396.4 477 53.7
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 9.0e-108 394.8 481 55.1
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.0e-107 393.7 439 53.5
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 6.4e-106 388.7 498 52.8
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 8.4e-106 388.3 480 54.8
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.9e-105 387.1 489 52.8
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.6e-104 384.0 481 53.8
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.3e-103 380.9 459 53.2
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.7e-103 380.6 486 52.9
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 5.1e-103 379.0 460 54.8
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 6.6e-103 378.6 463 54.6
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 1.1e-102 377.9 465 52.7
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.3e-102 376.3 477 51.8
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 4.3e-102 375.9 463 51.0
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-101 374.4 464 52.2
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 3.6e-101 372.9 480 51.2
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 4.8e-101 372.5 460 53.5
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 6.2e-101 372.1 577 47.7
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.4e-100 370.9 469 52.5
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-100 370.2 479 52.0
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.4e-100 370.2 479 52.0
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.0e-100 369.4 479 52.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 4.0e-100 369.4 431 52.4
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 5.3e-100 369.0 433 52.0
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.5e-99 367.5 452 52.9
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.3e-98 364.4 474 51.7
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.9e-98 363.2 419 56.3
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 6.4e-98 362.1 463 51.4
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 6.4e-98 362.1 485 50.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-97 360.5 470 51.7
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.2e-96 357.8 470 51.9
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.6e-96 357.5 462 51.7
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 2.7e-96 356.7 489 50.7
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 3.5e-96 356.3 440 53.2
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 6.0e-96 355.5 456 51.1
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.0e-95 354.8 469 53.9
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.1e-94 351.3 420 54.0
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.5e-94 350.9 484 49.8
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 1.9e-94 350.5 486 49.2
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 9.6e-94 348.2 482 50.2
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 9.6e-94 348.2 425 54.1
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.6e-94 348.2 337 61.7
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 3.7e-93 346.3 509 47.9
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 6.2e-93 345.5 475 49.5
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 4.0e-92 342.8 474 49.2
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.2e-91 341.3 457 49.0
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 3.4e-91 339.7 475 48.2
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 5.8e-91 339.0 503 45.9
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 9.9e-91 338.2 472 47.0
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 9.9e-91 338.2 477 49.3
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 9.9e-91 338.2 461 50.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.9e-90 336.7 491 47.7
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.9e-90 336.7 445 51.9
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 3.2e-89 333.2 475 50.5
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.2e-89 332.8 489 48.7
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 5.5e-89 332.4 490 48.4
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 5.5e-89 332.4 475 49.3
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 7.1e-89 332.0 451 50.6
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.2e-88 331.3 451 47.7
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 2.1e-88 330.5 466 46.8
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.7e-88 330.1 376 52.7
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 3.5e-88 329.7 435 52.9
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 6.0e-88 328.9 402 53.0
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 7.9e-88 328.6 494 46.6
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 8.7e-87 325.1 467 47.8
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.5e-86 323.6 432 47.9
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 3.3e-86 323.2 471 46.1
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 7.4e-86 322.0 490 49.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.6e-86 321.6 471 48.2
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.1e-84 316.6 496 47.8
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 4.0e-84 316.2 470 47.9
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 9.0e-84 315.1 504 46.0
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 9.0e-84 315.1 464 48.7
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.2e-83 314.7 471 47.1
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.2e-82 310.5 355 58.0
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.9e-82 310.1 475 48.0
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 3.8e-82 309.7 496 46.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 5.5e-81 305.8 430 47.0
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 7.1e-81 305.4 489 43.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 7.1e-81 305.4 422 48.8
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.2e-80 304.7 436 48.4
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.0e-79 301.6 450 46.7
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.8e-79 300.8 429 47.3
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 3.0e-79 300.1 470 48.7
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.6e-77 294.3 558 41.0
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.8e-77 293.5 263 68.1
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.1e-76 291.6 443 47.9
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.4e-76 290.4 481 44.9
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 6.9e-76 288.9 422 48.1
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.4e-75 286.6 408 48.5
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.4e-73 281.2 464 46.8
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.1e-72 277.3 422 46.0
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.7e-72 276.9 449 45.7
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.3e-71 274.6 533 39.6
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.3e-71 273.9 258 61.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 5.7e-70 269.2 462 43.5
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 7.4e-70 268.9 285 61.4
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.8e-69 266.9 447 45.2
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.7e-69 266.5 479 43.6
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.5e-67 259.6 332 52.4
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.0e-66 258.5 384 46.1
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.7e-66 257.7 466 43.3
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 5.5e-65 252.7 425 42.4
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.1e-60 238.4 428 42.3
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.6e-54 217.2 482 36.3
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.7e-53 214.5 392 39.5
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 9.7e-46 188.7 426 33.8
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 9.1e-44 182.2 259 50.2
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.3e-42 178.3 257 47.1
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.4e-36 158.3 463 31.3
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.7e-34 151.4 407 31.7
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 7.8e-27 125.9 453 29.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.6e-24 117.1 145 51.0
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 6.1e-24 116.3 94 62.8
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.6e-22 110.9 183 39.9
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.0e-20 102.8 322 29.2
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 7.0e-20 102.8 67 68.7
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.6e-19 101.7 180 38.3
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-18 98.6 100 55.0
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 2.3e-18 97.8 172 38.4
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 4.3e-17 93.6 195 39.5
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 8.0e-16 89.4 188 36.2
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.4e-15 88.6 76 56.6
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 2.3e-15 87.8 142 38.7
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 8.9e-15 85.9 389 26.2
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 2.0e-14 84.7 163 36.8
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.1e-12 79.0 181 35.4
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.6e-11 75.1 173 38.2
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 2.7e-11 74.3 101 42.6
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 6.6e-10 69.7 125 45.6
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.1e-09 68.9 132 35.6
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 1.5e-09 68.6 300 26.3
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 1.5e-09 68.6 312 25.0
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 6.2e-08 63.2 226 35.0
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.8e-07 61.6 319 24.8
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 8.9e-07 59.3 72 44.4
Potri.001G030401 Populus trichocarpa HOM05D028338 ORTHO05D050529 1.5e-06 58.5 259 23.6


User provided reference genes

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