Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 2274.6 1160 100.0
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1504.2 1209 65.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1488.0 1211 64.7
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1464.9 1215 64.4
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1439.1 1227 63.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1416.0 1222 61.5
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1375.9 1218 59.5
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1372.1 1217 60.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1371.7 1216 59.4
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1369.0 1216 59.8
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1368.2 1223 59.2
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1364.7 1219 60.0
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1364.0 1224 59.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1364.0 1216 59.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1363.2 1216 58.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1358.2 1223 58.8
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1357.8 1218 59.1
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1218 59.6
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1354.3 1222 59.2
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1353.2 1218 59.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1353.2 1217 59.2
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1349.0 1215 58.6
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1347.0 1208 58.9
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1336.2 1220 58.3
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1335.1 1217 57.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1334.7 1222 58.2
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1329.3 1215 57.9
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1326.2 1197 59.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1323.9 1221 56.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1323.9 1220 58.2
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1320.1 1216 57.7
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1318.5 1213 57.2
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1315.1 1194 58.5
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1314.3 1186 59.1
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1312.4 1214 56.8
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1312.0 1211 57.2
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1308.5 1217 56.9
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1305.4 1226 56.6
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1305.4 1225 57.1
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1305.0 1210 57.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1303.9 1210 57.3
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1302.7 1217 56.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1302.0 1208 57.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1300.4 1210 57.0
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1299.6 1210 57.0
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1299.6 1217 57.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1299.3 1210 57.0
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1293.5 1210 56.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1283.5 1220 56.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1280.0 1256 56.1
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1278.8 1221 55.2
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1275.8 1222 54.7
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1275.0 1215 56.4
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1273.5 1221 54.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1270.8 1207 55.8
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1270.0 1213 55.3
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1268.1 1209 55.2
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1266.9 1223 55.6
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1265.4 1206 55.2
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1264.2 1219 55.1
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1262.7 1224 54.6
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1261.5 1212 55.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1260.7 1217 56.9
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1260.0 1219 54.4
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1259.6 1219 54.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1258.8 1215 54.4
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1256.9 1230 55.4
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1256.1 1221 54.5
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1255.0 1216 54.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1255.0 1216 54.5
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1253.8 1221 55.9
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1253.8 1213 55.5
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1253.0 1216 56.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1252.7 1205 55.4
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1246.9 1183 54.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1244.6 1175 56.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1243.8 1220 54.0
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1238.0 1225 54.0
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1237.6 1217 53.9
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1236.1 1192 53.5
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1231.5 1189 54.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1228.0 1203 53.3
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1224.2 1213 52.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1221.5 1175 55.7
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1216.8 1220 53.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1216.4 1213 52.8
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1212.6 1206 53.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1204.5 1123 56.6
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1155.2 1211 52.5
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1150.2 1220 52.7
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1148.7 998 60.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1143.6 1264 51.6
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1137.5 1221 51.4
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1132.5 1149 53.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1129.4 1218 50.6
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1103.6 1214 50.4
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1102.4 1149 51.8
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1090.5 1219 50.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1088.9 1196 50.5
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 2.1e-310 1069.3 1029 55.1
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 9.7e-276 954.1 820 61.0
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 7.2e-271 937.9 1062 50.0
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 3.1e-266 922.5 895 53.6
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 2.0e-249 866.7 965 50.6
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 3.4e-244 849.4 1120 45.9
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 4.4e-236 822.4 838 55.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.3e-229 800.0 1247 38.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 5.7e-228 795.4 1252 39.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.0e-224 782.3 1252 37.1
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.5e-207 727.6 1198 37.1
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 5.6e-207 725.7 1178 38.2
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-202 710.7 647 58.6
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.6e-198 697.6 1155 37.8
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 4.0e-197 693.0 1164 37.8
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 5.2e-197 692.6 1152 37.4
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.9e-183 647.5 811 44.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-175 621.3 1012 39.1
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 2.4e-173 614.0 1219 32.5
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.6e-166 591.3 614 53.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.9e-162 577.8 651 48.2
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-148 531.9 569 52.2
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.2e-138 497.3 538 51.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 4.8e-134 483.4 469 56.5
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.1e-129 468.0 419 57.8
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.1e-121 439.9 502 47.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 9.9e-95 352.8 323 58.2
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 3.9e-83 314.3 299 56.5
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.0e-71 275.4 1389 22.6
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.3e-58 231.1 261 46.4
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.5e-55 222.6 190 60.5
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.2e-54 218.8 211 55.0
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.7e-41 174.9 421 30.4
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.4e-40 172.2 204 48.0
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 3.6e-36 158.3 109 69.7
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 9.7e-34 150.2 346 28.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.2e-30 139.0 219 41.6
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.3e-22 113.2 95 62.1
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 5.7e-18 97.8 73 67.1
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 4.5e-15 88.2 78 60.3
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.0e-14 87.0 520 23.3
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 5.0e-14 84.7 63 66.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-13 83.2 78 53.8
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 5.5e-13 81.3 213 26.3
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.4e-11 76.6 71 59.2
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.2e-10 73.6 76 47.4
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.6e-10 72.4 71 49.3
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-09 69.7 54 59.3
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 4.8e-09 68.2 54 57.4
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 2.4e-08 65.9 71 45.1
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.0e-08 64.3 69 50.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.0e-07 62.8 50 70.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.0e-07 62.8 50 70.0


User provided reference genes

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