Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 7.7e-250 866.7 438 100.0
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.1e-216 756.5 431 86.8
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 5.5e-216 754.2 431 86.1
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.0e-214 748.0 436 83.7
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 3.8e-209 731.5 431 82.4
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 6.6e-209 730.7 430 82.3
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.1e-208 729.9 431 82.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.5e-208 729.6 431 83.8
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.3e-208 728.0 431 83.5
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 4.3e-208 728.0 431 82.4
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 7.3e-208 727.2 431 82.8
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.2e-207 726.5 431 83.5
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.6e-207 726.1 431 83.1
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.6e-207 726.1 435 82.1
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 2.8e-207 725.3 431 83.5
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.4e-206 723.0 431 82.4
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.4e-206 723.0 431 82.8
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 3.1e-206 721.8 431 82.8
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 3.1e-206 721.8 431 82.8
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 4.0e-206 721.5 436 81.2
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.9e-206 720.3 431 82.1
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.2e-205 719.9 431 82.1
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.2e-205 719.9 431 82.6
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 1.2e-205 719.9 438 80.1
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 2.0e-205 719.2 431 82.4
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 2.6e-205 718.8 431 81.9
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.6e-205 718.8 431 81.9
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 3.4e-205 718.4 431 82.6
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 7.5e-205 717.2 431 81.9
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 1.7e-204 716.1 431 81.4
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.7e-204 716.1 431 81.4
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 2.9e-204 715.3 431 82.8
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 3.7e-204 714.9 431 81.9
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 3.7e-204 714.9 432 81.7
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 3.7e-204 714.9 431 80.7
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 6.4e-204 714.1 431 81.7
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.4e-204 714.1 431 81.2
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 8.3e-204 713.8 431 81.4
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.4e-203 713.0 431 81.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.2e-203 711.8 430 81.9
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 3.2e-203 711.8 431 80.5
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 3.2e-203 711.8 431 79.6
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.1e-203 711.4 431 81.7
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.4e-203 711.1 431 80.7
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 9.2e-203 710.3 431 80.3
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 9.2e-203 710.3 431 80.3
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 1.2e-202 709.9 431 81.7
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.7e-202 708.8 431 81.0
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 3.5e-202 708.4 431 79.8
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 3.5e-202 708.4 431 81.0
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 6.0e-202 707.6 431 79.1
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 6.0e-202 707.6 431 81.2
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 6.0e-202 707.6 431 80.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 6.0e-202 707.6 431 80.0
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 7.8e-202 707.2 431 80.3
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.0e-201 706.8 431 79.6
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.3e-201 706.4 431 80.7
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 3.0e-201 705.3 431 80.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.0e-201 705.3 431 78.9
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 3.0e-201 705.3 431 79.8
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.0e-201 705.3 432 80.6
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 3.9e-201 704.9 431 80.5
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 3.9e-201 704.9 431 80.0
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 5.0e-201 704.5 431 80.5
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 5.0e-201 704.5 431 80.7
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 8.6e-201 703.7 431 80.7
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.6e-201 703.7 431 80.3
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-200 703.4 427 80.1
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 1.1e-200 703.4 431 79.1
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 1.1e-200 703.4 431 80.3
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.5e-200 703.0 431 80.0
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.9e-200 702.6 431 79.8
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 2.5e-200 702.2 431 79.8
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 2.5e-200 702.2 431 80.0
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 3.3e-200 701.8 431 79.6
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 4.3e-200 701.4 431 80.3
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 4.3e-200 701.4 431 79.4
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 7.3e-200 700.7 430 79.1
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 9.5e-200 700.3 431 79.8
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 9.5e-200 700.3 431 79.8
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 1.6e-199 699.5 431 79.8
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.1e-199 699.1 431 79.8
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.1e-199 699.1 431 79.8
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 2.8e-199 698.7 430 79.1
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 3.6e-199 698.4 431 79.4
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 4.7e-199 698.0 431 80.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.7e-199 698.0 430 80.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 6.2e-199 697.6 431 79.8
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 8.0e-199 697.2 431 79.8
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 8.0e-199 697.2 430 78.4
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.1e-198 696.8 431 78.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-198 696.8 431 79.4
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-198 696.8 431 79.4
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 2.3e-198 695.7 457 75.5
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 6.8e-198 694.1 431 79.4
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 6.8e-198 694.1 431 78.9
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 6.8e-198 694.1 431 79.6
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.2e-197 693.3 431 79.1
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.2e-197 693.3 430 79.1
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 2.6e-197 692.2 432 77.8
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 4.4e-197 691.4 431 78.4
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.7e-196 688.3 431 78.7
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 3.2e-195 685.3 445 77.1
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 4.1e-195 684.9 431 78.9
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 6.6e-193 677.6 437 76.4
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 4.3e-192 674.9 437 75.5
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.6e-192 674.5 431 77.7
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.1e-191 672.5 440 75.7
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 2.8e-191 672.2 405 81.2
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 3.6e-191 671.8 430 75.3
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.3e-188 663.3 431 76.8
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.9e-188 662.1 431 76.1
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.1e-187 660.2 431 75.6
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.6e-186 656.4 431 76.1
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.6e-186 654.8 431 75.4
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.1e-184 650.2 436 72.9
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.9e-184 649.4 382 82.7
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 4.2e-179 631.7 432 72.0
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 9.2e-179 630.6 464 67.9
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.9e-176 622.9 426 71.8
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.3e-176 622.1 433 70.9
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.1e-175 619.4 431 72.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.5e-168 596.7 430 68.8
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 5.6e-168 594.7 425 68.7
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 7.6e-165 584.3 425 68.5
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 5.8e-157 558.1 346 80.1
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 5.8e-157 558.1 426 66.0
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.9e-148 529.3 487 58.7
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.7e-141 504.6 318 78.6
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 3.2e-139 499.2 315 78.4
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.8e-119 433.0 433 52.9
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.5e-117 425.6 329 66.3
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.1e-115 421.0 269 78.1
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.4e-113 414.1 257 77.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.4e-113 414.1 257 79.8
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.8e-111 406.4 258 76.4
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 8.5e-108 394.8 231 84.4
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.8e-94 350.5 396 53.3
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 8.0e-90 335.1 202 81.7
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.9e-86 323.9 201 80.1
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 4.6e-77 292.7 174 79.3
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 5.1e-76 289.3 174 80.5
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.7e-71 274.2 218 66.1
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 2.2e-71 273.9 182 75.3
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.1e-70 271.6 420 40.7
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.6e-66 257.7 214 63.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 5.2e-65 252.7 214 62.6
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 8.9e-65 251.9 218 61.0
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 7.6e-64 248.8 288 46.2
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 2.4e-62 243.8 236 56.8
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 5.6e-59 232.6 216 57.4
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 2.6e-56 223.8 118 88.1
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.8e-50 203.0 118 82.2
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 6.2e-42 176.0 188 54.3
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 6.0e-37 159.5 83 90.4
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.9e-37 159.1 87 85.1
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.2e-26 124.4 127 45.7
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 6.9e-25 119.4 154 42.9
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 2.2e-23 114.4 67 83.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 4.2e-22 110.2 203 39.4
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.0e-20 105.5 72 69.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.1e-19 102.1 125 46.4
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 3.3e-19 100.5 135 45.2
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.4e-17 94.4 56 80.4
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 2.2e-15 87.8 57 73.7
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 3.8e-15 87.0 66 68.2
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.9e-14 84.7 75 52.0
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 4.2e-14 83.6 47 85.1
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.0e-11 74.7 48 79.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 9.7e-11 72.4 69 60.9
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 2.8e-10 70.9 46 73.9
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 1.4e-09 68.6 53 66.0
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.2e-08 65.5 37 89.2
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 1.3e-07 62.0 68 51.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 1.5e-06 58.5 31 83.9
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 7.2e-06 56.2 43 62.8


User provided reference genes

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