Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 7.9e-228 793.5 422 100.0
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.5e-117 427.2 321 72.3
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 5.9e-114 415.2 333 68.5
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 7.7e-114 414.8 321 71.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 5.5e-112 408.7 325 68.9
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.5e-109 400.6 321 67.3
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.6e-109 399.8 321 67.0
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.3e-108 397.5 321 68.5
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 4.8e-108 395.6 321 69.5
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.8e-108 395.6 321 67.0
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 8.2e-108 394.8 321 67.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-107 394.4 321 68.5
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.1e-107 394.4 321 67.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.4e-107 394.0 321 67.9
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.4e-107 394.0 321 67.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.8e-107 393.7 327 67.6
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.8e-107 393.7 327 67.0
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.1e-107 392.9 321 67.3
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.1e-107 392.5 321 66.4
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.1e-107 392.5 321 67.0
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.3e-107 392.1 321 67.0
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.3e-107 392.1 321 67.0
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.3e-107 392.1 321 67.0
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 5.3e-107 392.1 321 67.6
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.2e-106 391.0 321 66.7
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.6e-106 389.8 322 65.2
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 4.5e-106 389.0 321 66.0
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 4.5e-106 389.0 320 65.3
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 5.9e-106 388.7 321 67.3
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 5.9e-106 388.7 322 68.3
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 5.9e-106 388.7 321 67.0
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 7.7e-106 388.3 321 66.4
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.0e-105 387.9 321 65.7
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.0e-105 387.9 321 65.1
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.3e-105 387.5 321 65.1
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.3e-105 387.5 321 65.4
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.3e-105 387.5 321 66.4
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.2e-105 386.7 321 66.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.8e-105 386.0 321 65.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 3.8e-105 386.0 321 65.4
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.8e-105 386.0 321 67.6
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 3.8e-105 386.0 321 65.7
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 5.0e-105 385.6 321 66.7
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 6.5e-105 385.2 321 66.7
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 6.5e-105 385.2 321 66.7
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 6.5e-105 385.2 321 67.0
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.1e-104 384.4 321 66.0
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.5e-104 384.0 321 65.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.9e-104 383.6 321 65.1
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 9.4e-104 381.3 321 65.7
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.6e-103 380.6 321 63.9
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.1e-103 380.2 321 65.7
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.1e-103 380.2 321 66.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.1e-103 380.2 331 63.1
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.7e-103 379.0 321 65.4
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 8.0e-103 378.3 321 64.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.0e-102 377.9 338 63.3
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.4e-102 377.5 365 58.4
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 6.7e-102 375.2 321 63.9
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-101 374.4 321 64.8
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.0e-101 373.6 326 66.6
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.0e-101 373.6 321 63.2
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 4.4e-101 372.5 321 65.7
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 7.5e-101 371.7 321 64.8
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 9.7e-101 371.3 322 64.0
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.7e-100 370.5 321 63.9
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.8e-100 369.8 321 65.4
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 3.7e-100 369.4 321 64.2
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.8e-100 369.0 320 63.8
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 4.8e-100 369.0 321 64.5
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 4.8e-100 369.0 321 64.5
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 6.3e-100 368.6 321 64.2
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 6.3e-100 368.6 321 65.1
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 6.3e-100 368.6 321 62.9
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.4e-99 367.5 321 63.6
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.8e-99 367.1 321 62.6
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.4e-99 366.7 321 63.2
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.1e-99 365.9 322 63.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 5.3e-99 365.5 322 63.7
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 7.0e-99 365.2 321 65.1
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-98 364.4 321 62.6
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.5e-98 362.5 321 62.9
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 4.5e-98 362.5 318 62.9
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.9e-98 362.1 321 63.9
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 5.0e-97 359.0 323 61.9
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 8.5e-97 358.2 321 61.7
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.1e-96 357.8 356 57.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.5e-96 357.5 321 62.6
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.4e-94 350.9 321 60.1
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 8.8e-94 348.2 321 61.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 8.8e-94 348.2 321 60.1
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.4e-93 345.9 283 66.8
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 8.3e-92 341.7 321 59.2
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 8.3e-92 341.7 322 58.1
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.4e-91 340.9 321 58.9
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.2e-90 337.8 323 58.5
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.6e-90 337.4 305 62.3
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 2.0e-90 337.0 305 62.6
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.7e-90 336.7 296 64.2
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.5e-90 336.3 284 65.1
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.5e-90 335.9 289 66.1
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 7.7e-90 335.1 305 62.3
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 5.0e-89 332.4 322 58.1
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.5e-88 330.9 326 58.6
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 4.2e-88 329.3 306 60.8
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 5.7e-85 318.9 297 60.9
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 2.2e-84 317.0 297 60.6
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.8e-83 313.9 267 64.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.1e-83 313.2 327 54.7
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 9.2e-83 311.6 273 61.9
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.6e-82 310.8 273 63.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.7e-81 307.4 305 57.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 8.6e-81 305.1 321 54.5
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 8.6e-81 305.1 321 57.6
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-80 303.9 265 63.8
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 9.5e-80 301.6 339 52.8
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 5.8e-77 292.4 321 54.8
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-76 291.2 321 54.2
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 8.6e-73 278.5 273 56.4
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.6e-71 274.2 245 62.0
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.6e-71 274.2 321 49.8
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.2e-68 263.8 233 62.7
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.4e-67 260.4 325 48.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.5e-64 250.4 320 49.4
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.2e-62 242.7 394 42.4
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.4e-61 240.0 230 57.0
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.2e-58 231.5 323 42.4
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.4e-54 218.0 751 28.5
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.1e-51 208.4 184 65.8
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.3e-49 201.4 298 41.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.8e-46 191.0 195 57.4
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.5e-40 170.6 121 76.0
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 4.8e-39 166.4 163 62.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.1e-38 165.2 300 41.7
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.6e-37 160.6 153 60.1
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 5.8e-37 159.5 111 76.6
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.1e-30 138.7 120 57.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 2.6e-29 134.0 150 54.7
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 6.4e-28 129.4 314 31.8
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 3.5e-26 123.6 91 71.4
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 3.0e-25 120.6 301 36.2
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.9e-24 117.9 93 65.6
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-22 110.9 112 54.5
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.0e-22 110.2 149 52.3
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.2e-21 108.6 255 32.5
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.3e-20 105.1 158 45.6
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.1e-19 102.1 90 57.8
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 3.9e-17 93.6 78 59.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.5e-16 90.9 110 49.1
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.1e-14 84.0 51 84.3
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.4e-13 80.5 58 70.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.3e-08 63.9 397 23.7
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.8e-06 58.2 95 43.2


User provided reference genes

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