Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 2.0e-138 495.7 248 100.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 8.0e-103 377.5 235 80.4
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 9.8e-101 370.5 235 80.0
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.7e-100 369.8 235 78.7
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.3e-100 367.9 235 79.1
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 8.3e-100 367.5 235 79.1
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.1e-99 367.1 235 78.3
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.4e-99 366.7 235 78.3
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.4e-99 366.7 235 78.3
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.4e-99 365.9 235 78.7
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 4.1e-99 365.2 235 77.4
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 4.1e-99 365.2 244 76.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 7.0e-99 364.4 235 79.1
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.2e-98 363.6 235 77.0
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.2e-98 363.6 235 78.7
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.9e-98 361.3 235 77.9
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.9e-98 361.3 235 77.9
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 5.9e-98 361.3 235 77.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 7.7e-98 360.9 235 76.2
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.0e-97 360.5 235 77.4
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.0e-97 360.5 235 77.9
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.3e-97 360.1 235 78.3
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 5.0e-97 358.2 235 74.9
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.0e-97 358.2 235 78.7
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 8.6e-97 357.5 235 76.6
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.1e-96 357.1 235 76.2
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.5e-96 356.7 235 77.0
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.5e-96 355.9 235 76.6
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 4.2e-96 355.1 235 77.0
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 5.5e-96 354.8 235 74.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.5e-96 354.8 236 76.7
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 7.2e-96 354.4 235 77.4
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.2e-96 354.4 235 76.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 7.2e-96 354.4 235 76.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 9.5e-96 354.0 235 77.0
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-95 353.6 235 75.3
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.2e-95 353.6 241 74.7
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.6e-95 353.2 235 76.6
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-95 353.2 235 76.6
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-94 350.5 235 74.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.4e-94 350.1 235 75.7
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.4e-94 350.1 235 76.6
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.8e-94 349.7 236 75.4
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.8e-94 349.7 235 75.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.3e-94 349.4 235 75.7
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.0e-94 349.0 235 75.3
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.0e-94 349.0 236 75.8
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 3.0e-94 349.0 235 76.2
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.0e-94 349.0 235 77.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 3.0e-94 349.0 235 76.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 5.2e-94 348.2 235 74.9
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 6.8e-94 347.8 235 74.5
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 8.9e-94 347.4 235 74.5
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.2e-93 347.1 236 76.7
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.2e-93 347.1 235 74.9
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.5e-93 346.7 235 75.7
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.5e-93 346.7 235 74.5
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.5e-93 346.7 237 76.8
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.6e-93 345.9 235 73.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.4e-93 345.1 235 75.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 7.5e-93 344.4 235 74.9
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.7e-92 342.0 235 74.5
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 4.9e-92 341.7 235 73.2
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 4.9e-92 341.7 235 73.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 6.3e-92 341.3 235 73.2
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 8.3e-92 340.9 242 73.6
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-91 340.5 225 76.0
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-91 340.5 225 76.0
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.4e-91 340.1 235 74.0
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.4e-91 340.1 225 75.6
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.4e-91 340.1 235 75.3
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.4e-91 340.1 235 72.8
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-91 339.7 225 75.6
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.8e-91 339.7 235 73.6
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.4e-91 339.3 235 73.2
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 4.1e-91 338.6 235 73.6
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.1e-91 338.6 235 72.8
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.1e-91 338.6 243 74.5
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.1e-91 338.6 235 73.2
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.4e-91 338.2 228 74.6
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.2e-90 337.0 235 75.3
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.2e-90 337.0 236 75.4
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 3.5e-90 335.5 259 69.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.9e-89 332.4 237 72.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 6.6e-89 331.3 236 72.9
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.1e-88 330.5 235 72.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.1e-88 330.5 235 71.1
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-88 330.1 235 71.5
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.5e-88 330.1 236 72.9
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.5e-88 329.3 269 66.9
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.3e-88 328.9 235 71.1
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.6e-87 326.6 236 72.5
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.1e-87 326.2 235 71.5
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 4.7e-87 325.1 237 71.3
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 6.1e-87 324.7 235 71.5
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.0e-86 323.9 235 71.1
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.8e-86 323.2 276 62.7
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.1e-86 322.4 236 69.9
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 8.9e-86 320.9 235 70.6
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.5e-85 320.1 193 83.9
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.4e-85 318.9 235 70.2
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 9.8e-85 317.4 235 69.8
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.3e-84 317.0 235 70.2
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.7e-84 316.6 236 67.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.7e-84 316.6 236 67.4
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.4e-83 312.8 235 68.5
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.3e-81 307.0 206 74.3
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.9e-81 305.4 236 67.8
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.0e-81 305.1 237 67.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 6.6e-81 304.7 194 80.4
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.1e-80 303.9 250 66.0
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.1e-80 303.9 288 59.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.5e-80 303.5 236 67.8
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.5e-80 303.5 235 66.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.9e-80 303.1 238 66.4
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 4.3e-80 302.0 235 66.4
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.6e-79 298.9 235 65.5
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 3.6e-79 298.9 238 66.0
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.1e-78 297.4 193 77.7
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.8e-78 296.6 245 64.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.3e-78 296.2 228 67.5
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.5e-77 293.5 238 66.0
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 5.8e-77 291.6 236 64.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 9.8e-77 290.8 235 65.1
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.3e-76 290.4 235 65.5
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.9e-76 288.5 236 64.8
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 6.4e-76 288.1 235 63.0
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 6.4e-76 288.1 236 64.4
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.3e-76 287.7 235 63.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.4e-75 286.2 235 63.8
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 4.6e-74 282.0 242 64.5
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-73 280.4 235 63.4
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.3e-73 280.4 235 63.4
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 8.6e-73 277.7 235 62.6
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.1e-72 277.3 235 62.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.1e-72 277.3 235 62.6
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.5e-72 276.9 236 61.9
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.6e-72 275.0 235 63.0
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 7.3e-72 274.6 241 61.0
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.2e-71 273.9 235 61.7
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.6e-71 272.3 235 63.4
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 6.2e-71 271.6 254 59.4
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 6.2e-71 271.6 195 73.3
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.0e-70 268.9 235 63.0
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.9e-67 260.0 144 88.2
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.9e-65 252.3 240 57.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 3.9e-65 252.3 235 57.0
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 5.1e-65 251.9 235 57.0
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 2.5e-64 249.6 235 57.0
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 9.5e-64 247.7 235 56.6
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 7.6e-61 238.0 241 53.5
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.0e-42 175.3 132 65.2
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.5e-40 169.9 204 50.0
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.8e-39 166.4 189 53.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.4e-38 163.3 200 45.0
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.5e-29 134.0 93 72.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.7e-28 130.6 74 89.2
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-25 120.6 147 46.9
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.8e-25 120.6 89 70.8
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.1e-22 109.4 149 45.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.9e-19 100.5 181 39.8
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.0e-17 94.7 91 53.8
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.2e-15 87.0 148 36.5
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.7e-12 77.4 91 47.3
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.5e-12 75.1 40 85.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.5e-11 73.6 40 82.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 9.4e-11 71.6 40 75.0
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 4.7e-10 69.3 136 35.3
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 5.1e-09 65.9 43 65.1
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.7e-07 60.8 86 36.0
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 3.1e-06 56.6 32 87.5


User provided reference genes

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