Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 4.8e-299 1030.4 520 100.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 9.7e-143 511.1 479 53.9
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.9e-140 501.9 487 52.0
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 1.5e-138 497.3 486 53.5
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.2e-138 495.0 488 51.6
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 9.4e-138 494.6 476 52.5
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.1e-135 487.6 483 52.6
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 9.8e-127 458.0 481 50.3
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 2.7e-121 439.9 499 47.5
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 6.1e-121 438.7 495 46.7
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 4.0e-120 436.0 481 48.6
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 8.8e-120 434.9 483 48.7
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 1.2e-119 434.5 485 47.8
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 7.5e-119 431.8 483 48.4
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 9.8e-119 431.4 490 47.6
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 4.1e-117 426.0 483 46.6
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 9.2e-117 424.9 487 47.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.6e-116 424.1 474 47.7
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.6e-116 424.1 482 46.7
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.0e-116 423.7 484 46.3
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.7e-116 421.8 486 46.5
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.0e-115 421.4 497 46.3
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.0e-115 421.4 481 46.6
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.3e-115 421.0 482 46.7
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.9e-115 419.9 494 46.0
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 2.9e-115 419.9 497 46.3
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.8e-115 419.5 486 46.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.0e-115 419.1 486 46.1
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 5.0e-115 419.1 483 45.5
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 6.6e-115 418.7 486 46.7
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.6e-115 418.7 486 46.1
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 8.6e-115 418.3 487 47.2
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.5e-114 417.5 484 46.7
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.9e-114 417.2 482 46.5
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 4.3e-114 416.0 475 47.6
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 9.5e-114 414.8 496 45.4
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.6e-113 414.1 482 46.5
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 2.8e-113 413.3 474 47.0
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 2.8e-113 413.3 484 46.5
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.6e-113 412.9 495 44.6
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 4.7e-113 412.5 487 46.6
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.7e-113 412.5 484 46.1
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 6.1e-113 412.1 492 45.9
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 6.1e-113 412.1 485 46.4
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 6.1e-113 412.1 485 46.4
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 6.1e-113 412.1 486 47.5
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.0e-113 411.8 484 46.3
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-112 410.6 484 46.3
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.3e-112 410.2 487 46.4
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.0e-112 409.8 481 47.0
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 8.9e-112 408.3 473 45.9
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 1.5e-111 407.5 484 46.1
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.5e-111 407.5 494 45.5
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.4e-111 406.4 496 45.4
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 3.4e-111 406.4 500 44.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.7e-111 405.6 481 46.6
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 5.7e-111 405.6 481 45.7
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 7.5e-111 405.2 491 47.0
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 9.8e-111 404.8 490 45.7
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.7e-110 404.1 488 45.9
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 2.2e-110 403.7 497 44.3
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.9e-110 403.3 487 46.2
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.9e-110 403.3 482 45.4
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.7e-110 402.9 481 46.4
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 8.3e-110 401.7 476 45.6
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.4e-109 400.2 485 44.7
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 4.1e-109 399.4 479 43.6
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 5.4e-109 399.1 485 44.7
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.6e-108 397.5 483 44.9
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.0e-108 397.1 482 45.4
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 3.5e-108 396.4 485 43.5
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 4.6e-108 396.0 489 43.6
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 7.8e-108 395.2 486 43.4
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.3e-107 394.4 481 45.9
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 3.9e-107 392.9 485 42.7
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.1e-106 391.3 486 43.4
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.1e-106 391.3 484 44.2
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 3.3e-106 389.8 497 44.9
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 5.6e-106 389.0 484 45.2
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.2e-105 387.9 471 44.4
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.6e-105 387.5 483 44.3
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.1e-105 387.1 490 42.4
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.1e-105 387.1 490 42.4
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.1e-105 387.1 522 41.2
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 4.7e-105 386.0 483 43.1
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 6.2e-105 385.6 484 43.6
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 1.4e-104 384.4 489 42.5
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.8e-104 384.0 484 43.4
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.2e-103 381.3 493 43.4
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.5e-103 380.9 484 43.4
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 2.6e-103 380.2 478 42.9
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 5.8e-103 379.0 502 42.8
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 5.8e-103 379.0 495 43.0
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 1.4e-101 374.4 487 43.3
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.4e-101 374.4 484 42.8
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.9e-101 374.0 484 43.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-99 367.1 502 42.4
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.2e-95 354.8 465 43.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 7.1e-93 345.5 369 48.0
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 7.8e-92 342.0 370 46.5
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.9e-91 339.7 487 40.2
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 8.6e-91 338.6 372 46.2
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 4.3e-90 336.3 483 41.2
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.2e-89 334.7 406 44.8
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.6e-89 334.3 479 40.9
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.2e-87 328.2 524 37.0
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.6e-87 327.0 375 45.3
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 9.6e-82 308.5 468 38.9
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.8e-81 307.0 474 39.0
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.2e-80 302.8 477 40.9
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 6.8e-80 302.4 491 37.9
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 2.0e-79 300.8 436 40.1
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 2.7e-76 290.4 474 36.1
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 7.8e-76 288.9 411 41.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 5.4e-69 266.2 290 46.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 7.1e-69 265.8 410 38.8
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 7.1e-69 265.8 291 45.4
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 2.3e-67 260.8 328 41.8
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.3e-66 256.5 371 37.2
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 7.4e-66 255.8 290 45.5
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.0e-63 247.7 422 35.3
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.4e-61 240.7 543 31.7
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.2e-60 238.4 228 53.1
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.6e-60 238.0 256 47.7
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-59 234.2 495 34.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.9e-59 233.4 478 33.9
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 8.7e-59 232.3 377 39.5
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 4.3e-58 229.9 466 33.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 5.3e-56 223.0 412 35.2
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.3e-54 218.4 353 37.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.1e-53 215.3 374 35.8
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.9e-53 214.5 470 31.7
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 9.3e-53 212.2 382 35.6
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.0e-51 208.8 589 28.2
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 3.3e-50 203.8 184 54.3
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.3e-49 201.8 258 43.0
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 3.1e-48 197.2 289 38.4
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 6.9e-48 196.1 186 51.6
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 8.5e-46 189.1 154 57.8
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.6e-44 184.9 486 28.6
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 3.0e-43 180.6 226 43.4
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.1e-42 178.7 249 40.6
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-42 178.7 463 28.3
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 3.7e-41 173.7 323 35.9
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 4.1e-40 170.2 461 27.1
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 5.3e-40 169.9 172 51.7
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 4.4e-34 150.2 199 42.7
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 8.2e-33 146.0 264 35.6
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 2.4e-32 144.4 411 27.0
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 7.7e-31 139.4 463 27.2
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 2.5e-29 134.4 175 38.3
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 5.5e-29 133.3 255 32.9
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.1e-28 131.3 449 26.5
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 3.0e-27 127.5 139 48.2
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.1e-26 125.6 276 31.2
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.2e-23 115.5 178 41.0
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-23 114.8 96 54.2
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.0e-22 112.5 121 46.3
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 2.2e-22 111.3 123 45.5
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 2.2e-22 111.3 129 47.3
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 7.2e-21 106.3 87 57.5
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.6e-20 105.1 149 43.6
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-19 101.3 127 44.1
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 8.8e-19 99.4 126 43.7
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 3.1e-16 90.9 115 36.5
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 8.5e-14 82.8 301 28.2
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 3.2e-13 80.9 92 47.8
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 2.9e-06 57.8 77 32.5


User provided reference genes

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