Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 1.4e-31 139.0 71 100.0
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 93.0
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 7.8e-27 123.2 71 88.7
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 7.8e-27 123.2 71 88.7
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 2.3e-26 121.7 71 87.3
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 2.5e-25 118.2 69 85.5
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.5e-25 118.2 71 84.5
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 3.3e-25 117.9 69 85.5
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 4.3e-25 117.5 71 83.1
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 4.3e-25 117.5 71 84.5
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 7.3e-25 116.7 69 84.1
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 7.3e-25 116.7 71 81.7
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 7.3e-25 116.7 71 83.1
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 7.3e-25 116.7 71 83.1
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 7.3e-25 116.7 71 83.1
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 9.5e-25 116.3 69 81.2
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 2.1e-24 115.2 71 80.3
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.1e-24 115.2 71 80.3
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.1e-24 115.2 71 80.3
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.1e-24 115.2 71 80.3
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 2.1e-24 115.2 71 80.3
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 2.8e-24 114.8 69 82.6
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 2.8e-24 114.8 71 80.3
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 6.2e-24 113.6 71 78.9
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 1.1e-23 112.8 71 80.3
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 1.1e-23 112.8 71 78.9
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 1.1e-23 112.8 71 78.9
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.1e-23 112.8 71 78.9
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.1e-23 112.8 71 78.9
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.4e-23 112.5 69 81.2
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.4e-23 112.5 71 77.5
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.4e-23 112.5 71 77.5
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 1.4e-23 112.5 71 80.3
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 1.4e-23 112.5 71 80.3
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.8e-23 112.1 71 78.9
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.8e-23 112.1 71 77.5
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 2.3e-23 111.7 69 78.3
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 2.3e-23 111.7 71 77.5
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 3.1e-23 111.3 71 76.1
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 3.1e-23 111.3 71 77.5
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 3.1e-23 111.3 71 77.5
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 4.0e-23 110.9 71 76.1
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 4.0e-23 110.9 71 77.5
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 4.0e-23 110.9 71 77.5
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 4.0e-23 110.9 71 76.1
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 5.2e-23 110.5 71 76.1
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 6.8e-23 110.2 71 76.1
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 6.8e-23 110.2 71 76.1
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 6.8e-23 110.2 71 77.5
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 8.9e-23 109.8 71 74.6
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 8.9e-23 109.8 71 77.5
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 1.2e-22 109.4 71 76.1
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.5e-22 109.0 71 77.5
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 1.5e-22 109.0 71 76.1
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 2.0e-22 108.6 71 76.1
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 2.0e-22 108.6 71 76.1
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 2.0e-22 108.6 71 76.1
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.0e-22 108.6 71 76.1
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 2.0e-22 108.6 71 74.6
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 2.6e-22 108.2 71 76.1
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 2.6e-22 108.2 71 76.1
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.4e-22 107.8 71 76.1
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 4.4e-22 107.5 71 74.6
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 4.4e-22 107.5 71 74.6
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 4.4e-22 107.5 71 74.6
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 4.4e-22 107.5 71 74.6
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 4.4e-22 107.5 71 74.6
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 5.8e-22 107.1 71 74.6
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 5.8e-22 107.1 71 74.6
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 5.8e-22 107.1 71 74.6
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 5.8e-22 107.1 71 74.6
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 1.3e-21 105.9 71 73.2
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 73.9
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 73.9
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 73.9
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 73.9
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 73.9
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 73.9
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 75.4
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 1.3e-21 105.9 71 74.6
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.7e-21 105.5 71 70.4
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 1.7e-21 105.5 71 73.2
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 2.9e-21 104.8 71 73.2
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 2.9e-21 104.8 71 73.2
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 2.9e-21 104.8 71 73.2
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 3.7e-21 104.4 71 73.2
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 8.3e-21 103.2 71 71.8
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 8.3e-21 103.2 71 71.8
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 4.1e-20 100.9 71 70.4
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.7e-19 98.2 61 77.0
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 6.0e-19 97.1 69 68.1
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 7.8e-19 96.7 71 66.2
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 1.0e-18 96.3 98 55.1
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.3e-18 95.9 63 74.6
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.7e-18 95.5 71 66.2
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.7e-18 95.5 90 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 6.6e-18 93.6 71 62.0
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 8.6e-18 93.2 69 66.7
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 8.6e-18 93.2 69 66.7
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 4.3e-17 90.9 71 60.6
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 6.2e-16 87.0 49 89.8
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 2.2e-13 78.6 49 75.5
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 2.9e-13 78.2 50 78.0
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 3.7e-13 77.8 56 67.9
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 8.3e-13 76.6 51 70.6
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 8.3e-13 76.6 145 38.6
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.1e-12 76.3 44 75.0
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 2.4e-12 75.1 50 72.0
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 3.2e-12 74.7 46 76.1
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 4.1e-12 74.3 50 74.0
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 7.1e-12 73.6 62 59.7
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 9.2e-12 73.2 73 49.3
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 2.1e-11 72.0 74 51.4
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 1.3e-10 69.3 48 70.8
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 3.9e-10 67.8 38 78.9
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 5.1e-10 67.4 62 56.5
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 2.5e-09 65.1 69 52.2
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 4.3e-09 64.3 46 65.2
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 7.3e-09 63.5 53 60.4
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.6e-08 62.4 48 64.6
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 2.1e-08 62.0 47 68.1
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.8e-08 61.6 34 85.3
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 6.2e-08 60.5 43 69.8
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 8.1e-08 60.1 71 45.1
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 1.1e-07 59.7 38 76.3
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 5.2e-07 57.4 36 72.2
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 8.9e-07 56.6 45 66.7
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 1.5e-06 55.8 43 65.1
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.6e-06 55.1 40 67.5
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 2.6e-06 55.1 37 73.0
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.4e-06 54.7 35 74.3
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.4e-06 54.7 35 74.3


User provided reference genes

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