Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 0.0e+00 1139.4 584 100.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 3.9e-233 811.6 585 71.8
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.9e-227 792.7 620 67.3
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.7e-226 788.9 576 71.2
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-217 760.0 575 68.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 4.3e-216 755.0 590 66.4
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 7.4e-216 754.2 576 67.0
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.8e-214 749.6 578 68.0
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 3.1e-214 748.8 576 67.2
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 4.1e-214 748.4 575 65.6
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 5.3e-214 748.0 578 65.6
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 6.9e-214 747.7 589 67.7
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.2e-213 746.9 576 66.7
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.4e-213 745.3 569 68.4
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 7.7e-213 744.2 575 66.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.7e-212 743.0 575 65.9
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 1.7e-212 743.0 581 65.6
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.2e-212 742.7 577 65.0
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.9e-212 742.3 575 65.2
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 2.9e-212 742.3 584 66.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 3.8e-212 741.9 576 65.5
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 5.0e-212 741.5 579 65.8
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 5.0e-212 741.5 586 66.0
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.5e-212 741.1 575 65.7
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.5e-212 740.7 577 65.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.1e-211 740.3 575 65.7
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.1e-211 740.3 577 65.2
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.2e-211 738.8 575 65.2
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.2e-211 738.8 577 65.5
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 4.2e-211 738.4 574 67.2
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.2e-211 737.6 576 66.0
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 9.4e-211 737.3 589 65.7
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.2e-210 736.9 576 66.0
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.2e-210 736.9 575 66.1
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 3.6e-210 735.3 576 66.3
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 6.1e-210 734.6 578 65.4
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 6.1e-210 734.6 585 64.4
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-209 733.4 576 65.5
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.0e-209 732.3 581 65.4
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 6.7e-209 731.1 575 65.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 6.7e-209 731.1 576 64.9
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 3.3e-208 728.8 573 64.9
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.3e-208 728.8 572 65.9
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.4e-208 727.6 572 65.6
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.7e-208 727.2 572 65.6
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 9.7e-208 727.2 583 66.0
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.7e-207 726.5 578 64.9
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.2e-207 726.1 575 65.9
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 2.8e-207 725.7 627 60.9
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.3e-207 724.5 599 63.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.4e-206 723.4 577 63.4
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-206 723.4 591 64.1
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.1e-206 722.2 576 63.9
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.1e-206 721.8 615 62.9
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 6.9e-206 721.1 589 63.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 1.2e-205 720.3 580 63.8
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.2e-205 720.3 575 64.7
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.5e-205 719.9 577 63.1
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.5e-205 719.9 577 64.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.0e-205 719.5 578 65.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 3.4e-205 718.8 572 64.3
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.4e-205 718.8 579 63.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.5e-205 718.4 578 65.7
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 7.7e-205 717.6 575 65.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 7.7e-205 717.6 577 63.6
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.3e-204 716.8 575 64.3
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.7e-204 716.5 575 64.2
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.7e-204 716.5 580 63.8
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.9e-204 715.7 571 64.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 3.8e-204 715.3 586 63.8
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 5.0e-204 714.9 643 59.4
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 8.5e-204 714.1 582 62.4
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.1e-203 713.8 585 62.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 2.5e-203 712.6 583 62.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 3.2e-203 712.2 571 63.9
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.2e-203 711.8 575 63.1
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.2e-202 710.3 584 62.3
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.2e-202 710.3 571 63.0
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.6e-202 709.9 586 62.3
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.6e-202 709.9 568 64.3
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 2.7e-202 709.1 577 63.1
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 2.7e-202 709.1 572 63.3
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 7.9e-202 707.6 577 62.7
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.0e-201 707.2 599 62.1
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.8e-201 706.4 572 63.5
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 3.0e-201 705.7 586 61.9
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.0e-201 705.7 587 63.7
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 3.9e-201 705.3 577 62.6
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 5.1e-201 704.9 586 61.9
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 8.8e-201 704.1 578 63.8
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.6e-200 702.6 576 62.3
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.6e-200 702.6 576 62.3
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 3.3e-200 702.2 576 62.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.3e-200 702.2 578 63.5
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 4.4e-200 701.8 569 64.1
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 4.4e-200 701.8 577 62.4
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.7e-199 698.7 557 66.1
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 6.3e-199 698.0 578 62.6
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.8e-198 696.4 570 63.2
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.5e-197 693.3 579 61.8
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 4.5e-197 691.8 556 63.5
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 5.9e-197 691.4 575 62.4
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 2.2e-196 689.5 575 62.1
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.4e-195 686.8 579 62.0
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.0e-193 680.6 578 61.6
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.0e-193 680.6 617 58.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 3.0e-193 679.1 559 62.4
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 3.9e-193 678.7 562 62.8
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.5e-192 676.8 558 62.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.6e-192 676.0 503 69.6
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 3.1e-190 669.1 574 59.8
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.7e-188 663.3 564 60.6
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 2.5e-187 659.4 575 59.5
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.2e-186 657.1 657 54.5
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 5.7e-184 648.3 544 61.4
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.0e-180 637.5 575 59.7
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 2.9e-180 636.0 576 58.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 8.3e-175 617.8 494 63.8
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.4e-174 616.3 471 66.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 2.9e-172 609.4 580 54.8
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.3e-169 599.7 577 56.5
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 3.9e-164 582.4 528 56.6
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 4.7e-162 575.5 572 52.8
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 2.9e-159 566.2 579 52.3
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.4e-158 563.1 496 59.9
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.6e-149 533.9 440 61.8
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 4.9e-143 512.3 379 70.2
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 8.1e-138 495.0 411 60.8
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 8.1e-138 495.0 411 60.8
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 5.2e-137 492.3 407 60.9
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.8e-135 486.1 361 66.2
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.4e-126 457.6 554 45.1
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 5.1e-124 449.1 569 44.5
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 6.4e-119 432.2 337 67.1
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 7.1e-102 375.6 273 67.8
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 6.3e-98 362.5 289 63.7
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 8.8e-84 315.5 241 64.3
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.4e-75 286.6 203 73.9
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 5.9e-72 276.2 195 67.2
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 3.6e-53 213.8 197 59.4
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 9.8e-43 179.1 138 63.0
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.4e-41 175.3 157 56.7
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 6.6e-39 166.4 152 57.2
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-38 164.5 117 68.4
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 4.1e-33 147.1 191 45.0
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.4e-25 120.2 82 76.8
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 4.7e-21 107.1 112 55.4
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.4e-17 95.5 85 60.0
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.4e-17 95.5 89 56.2
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 2.4e-17 94.7 85 58.8
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.7e-15 88.6 82 54.9
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.8e-12 78.6 129 34.9
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 5.4e-09 67.0 61 52.5
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 3.0e-07 61.2 237 26.6


User provided reference genes

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