Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 9.3e-209 729.9 365 100.0
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.8e-104 382.9 279 71.0
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 3.1e-103 379.4 279 70.6
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.6e-99 367.1 279 68.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.8e-98 363.6 280 68.2
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.5e-97 359.8 247 71.3
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 3.3e-97 359.4 237 74.7
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 4.3e-97 359.0 282 66.0
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.6e-96 357.1 226 80.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.1e-96 356.7 282 66.0
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.8e-96 356.3 246 73.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.7e-96 355.9 287 65.9
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.7e-96 355.9 231 77.5
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.8e-96 355.5 232 76.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 6.2e-96 355.1 282 65.6
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 8.2e-96 354.8 289 68.2
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 8.2e-96 354.8 247 69.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 8.2e-96 354.8 290 66.2
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 8.2e-96 354.8 292 65.1
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.1e-95 354.4 235 74.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.4e-95 354.0 285 63.2
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.8e-95 353.6 232 76.3
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-95 353.6 245 73.5
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 4.1e-95 352.4 239 74.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 5.3e-95 352.1 232 76.3
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 5.3e-95 352.1 282 64.9
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.2e-94 350.9 236 75.0
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.2e-94 350.9 282 64.9
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.5e-94 350.5 288 64.9
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.5e-94 350.5 230 76.1
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.0e-94 350.1 266 69.2
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.4e-94 349.4 232 74.6
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 3.4e-94 349.4 230 76.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 7.6e-94 348.2 285 66.3
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.6e-94 348.2 284 65.8
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 7.6e-94 348.2 249 69.1
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 7.6e-94 348.2 290 64.8
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.0e-93 347.8 286 64.7
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.3e-93 347.4 291 64.6
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.3e-93 347.4 268 67.9
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.2e-93 346.7 271 67.2
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.2e-93 346.7 288 65.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.9e-93 346.3 246 70.7
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.8e-93 345.9 246 71.1
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.8e-93 345.9 248 70.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 3.8e-93 345.9 288 66.0
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.8e-93 345.9 277 66.8
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.0e-93 345.5 232 74.6
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 5.0e-93 345.5 240 74.2
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 6.5e-93 345.1 232 72.8
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 6.5e-93 345.1 265 67.9
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.4e-93 344.7 286 64.7
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 8.4e-93 344.7 230 75.7
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.1e-92 344.4 248 69.4
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.1e-92 344.4 246 72.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.4e-92 344.0 286 65.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.9e-92 343.6 248 71.0
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.9e-92 343.6 244 70.1
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.5e-92 343.2 232 75.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.2e-92 342.4 247 70.9
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.2e-92 342.4 239 70.7
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 5.5e-92 342.0 232 75.0
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 7.2e-92 341.7 232 75.0
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 9.3e-92 341.3 286 64.3
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-91 340.1 234 73.1
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.1e-91 340.1 275 64.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 3.5e-91 339.3 264 66.7
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.6e-91 339.0 241 72.6
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.1e-91 338.6 260 68.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.0e-90 337.8 230 73.5
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.0e-90 337.8 266 66.2
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-90 337.4 240 72.5
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-90 337.4 250 70.0
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.3e-90 337.4 250 70.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.3e-90 336.7 240 71.2
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 3.0e-90 336.3 240 71.7
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.0e-90 336.3 240 72.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 3.0e-90 336.3 259 68.3
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 3.9e-90 335.9 232 73.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.1e-90 335.5 247 68.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 5.1e-90 335.5 235 73.6
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 5.1e-90 335.5 235 73.6
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 5.1e-90 335.5 235 73.6
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.1e-90 335.5 234 73.9
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 5.1e-90 335.5 246 71.5
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.1e-89 334.3 229 75.1
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.5e-89 334.0 263 67.7
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 2.5e-89 333.2 229 74.7
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.5e-89 333.2 233 72.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.5e-89 333.2 231 73.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.3e-89 332.4 231 73.2
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 3.7e-88 329.3 232 72.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.8e-87 327.0 289 60.2
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.1e-87 325.9 252 68.7
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.1e-87 325.9 252 68.7
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 5.3e-87 325.5 211 76.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.3e-85 320.9 299 57.9
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.7e-85 320.5 249 67.1
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.2e-85 320.1 236 66.5
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 3.8e-85 319.3 287 63.1
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 8.5e-85 318.2 230 70.4
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.2e-84 315.1 248 64.9
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.7e-83 313.2 286 60.1
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.1e-81 307.8 247 62.3
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.0e-81 307.0 230 66.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.3e-80 304.3 230 66.1
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.4e-79 300.1 273 58.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 6.9e-79 298.5 249 63.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 2.0e-78 297.0 202 73.8
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.0e-77 294.7 231 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.3e-77 294.3 258 60.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.7e-77 293.9 200 74.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.9e-77 293.1 230 66.5
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 4.2e-76 289.3 202 73.3
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 9.4e-76 288.1 200 72.5
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.2e-75 287.7 200 73.0
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.5e-73 280.8 231 64.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-72 277.3 202 68.3
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.7e-72 276.2 192 73.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 8.2e-72 275.0 200 69.0
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 8.2e-72 275.0 200 70.0
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.6e-70 270.8 240 60.8
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.9e-70 268.9 237 61.6
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 6.5e-69 265.4 232 62.1
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.5e-68 264.2 231 62.8
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.5e-68 262.3 234 62.0
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 8.0e-67 258.5 221 62.4
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.1e-65 254.6 230 58.7
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.0e-65 253.8 235 57.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.7e-61 240.7 341 45.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.8e-61 239.6 168 72.6
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.5e-60 236.9 230 53.5
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.7e-59 232.6 186 67.2
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.2e-57 228.0 236 53.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.2e-52 209.5 134 75.4
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.6e-51 207.6 290 44.5
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 4.4e-49 199.5 141 69.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.7e-46 190.3 147 67.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-44 184.5 123 73.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 3.3e-44 183.3 176 58.0
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.0e-42 176.8 126 68.3
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.5e-41 172.2 126 67.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-39 167.5 133 63.9
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.6e-38 162.9 159 57.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-35 153.3 99 72.7
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-35 153.3 99 72.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.9e-32 142.9 119 65.5
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 3.2e-31 140.2 139 56.8
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.7e-27 126.3 158 47.5
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.3e-26 124.0 74 79.7
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.3e-26 124.0 163 46.0
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 5.2e-26 122.9 163 46.6
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-25 121.7 163 46.0
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.4e-25 120.2 163 44.8
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 3.5e-22 110.2 197 37.1
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-20 104.8 72 73.6
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 6.2e-19 99.4 64 76.6
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 2.2e-16 90.9 63 74.6
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-15 88.6 65 67.7
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.4e-15 88.2 66 68.2
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.2e-14 85.1 64 68.8
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 2.7e-14 84.0 85 51.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.5e-12 77.4 44 79.5
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 3.3e-12 77.0 54 74.1
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.2e-11 75.1 44 75.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.4e-10 71.6 207 27.5
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.0e-10 70.1 65 55.4
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.4e-07 61.6 62 51.6
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 4.6e-06 56.6 82 41.5


User provided reference genes

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