Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1375 Utricularia gibba HOM05D003599 ORTHO05D004221 2.0e-178 629.4 419 100.0
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 4.2e-128 462.2 479 72.2
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 2.1e-116 423.3 479 64.7
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 3.5e-111 406.0 511 61.1
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 3.6e-103 379.4 491 60.1
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 3.3e-101 372.9 494 53.6
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 9.7e-101 371.3 447 55.7
Dinv43904 Davidia involucrata HOM05D003599 ORTHO05D004221 4.8e-100 369.0 489 57.1
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 4.5e-98 362.5 488 56.4
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 1.7e-97 360.5 489 59.9
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 2.9e-97 359.8 487 58.9
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 8.5e-97 358.2 489 58.7
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 1.4e-96 357.5 489 56.9
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 2.5e-96 356.7 488 56.4
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 2.1e-95 353.6 498 57.0
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 2.7e-95 353.2 490 57.8
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 4.7e-95 352.4 491 57.6
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 1.8e-94 350.5 490 58.8
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 5.1e-94 349.0 500 56.8
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 6.7e-94 348.6 486 57.6
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 8.8e-94 348.2 493 57.2
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 1.1e-93 347.8 490 57.3
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 2.0e-93 347.1 488 56.6
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 2.0e-93 347.1 489 57.1
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 2.0e-93 347.1 497 51.7
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 9.7e-93 344.7 491 58.0
TPR.G12253 Trifolium pratense HOM05D003599 ORTHO05D004221 3.7e-92 342.8 497 55.9
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 4.8e-92 342.4 489 58.5
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 6.3e-92 342.0 498 57.6
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 1.4e-91 340.9 489 57.3
PGSC0003DMG400025257 Solanum tuberosum HOM05D003599 ORTHO05D004221 1.8e-91 340.5 491 58.0
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 2.4e-91 340.1 488 57.8
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 3.1e-91 339.7 491 57.0
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 4.1e-91 339.3 487 55.2
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 6.9e-91 338.6 492 55.1
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 6.9e-91 338.6 489 57.3
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 6.9e-91 338.6 489 56.6
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 2.0e-90 337.0 498 52.0
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 4.5e-90 335.9 490 56.7
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 1.0e-89 334.7 528 52.1
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 1.3e-89 334.3 491 56.2
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 5.0e-89 332.4 489 58.7
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 6.5e-89 332.0 505 54.5
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 1.9e-88 330.5 488 56.4
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 1.9e-88 330.5 499 55.3
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 2.7e-87 326.6 504 56.7
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 4.7e-87 325.9 488 56.6
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 6.1e-87 325.5 505 55.0
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 1.0e-86 324.7 491 55.0
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.0e-86 324.7 490 53.7
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 1.0e-86 324.7 505 54.9
QL04p003614 Quercus lobata HOM05D003599 ORTHO05D004221 3.0e-86 323.2 455 48.4
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 3.9e-86 322.8 491 54.6
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 5.2e-86 322.4 491 54.6
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 5.2e-86 322.4 489 54.6
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 5.2e-86 322.4 512 45.5
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 5.2e-86 322.4 491 55.6
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 1.1e-85 321.2 498 50.8
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 2.6e-85 320.1 490 52.2
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 3.3e-85 319.7 525 53.1
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 7.4e-85 318.5 490 56.7
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 1.3e-84 317.8 490 50.8
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.3e-84 317.8 490 50.8
FAN12G2088 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.3e-84 317.8 490 50.8
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 1.4e-83 314.3 490 56.1
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 1.8e-83 313.9 489 55.6
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 2.4e-83 313.5 489 56.6
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 5.9e-82 308.9 490 52.2
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 1.0e-81 308.1 467 55.5
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 3.8e-81 306.2 487 54.6
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 8.5e-81 305.1 472 48.9
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 1.1e-80 304.7 472 54.7
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 1.6e-79 300.8 488 53.1
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 5.2e-78 295.8 481 50.7
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 1.2e-77 294.7 485 52.4
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 7.5e-77 292.0 489 54.4
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 9.7e-77 291.6 489 52.1
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 1.4e-75 287.7 482 51.9
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 1.4e-75 287.7 482 52.3
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 2.4e-75 287.0 486 52.3
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 1.6e-74 284.3 482 51.9
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 3.5e-74 283.1 490 51.2
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 1.0e-73 281.6 501 52.1
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 1.7e-73 280.8 498 46.6
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 9.4e-72 275.0 486 49.4
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 2.1e-71 273.9 480 51.7
vmacro13647 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 4.7e-71 272.7 327 64.5
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 1.8e-70 270.8 482 49.2
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 1.8e-70 270.8 482 49.2
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 1.8e-70 270.8 484 48.6
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 4.0e-70 269.6 484 48.1
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 5.2e-70 269.2 486 54.3
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 3.4e-69 266.5 482 50.2
HPP92_003005 Vanilla planifolia HOM05D003599 ORTHO05D004221 4.8e-68 262.7 490 49.4
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 6.3e-68 262.3 482 48.5
HPP92_003004 Vanilla planifolia HOM05D003599 ORTHO05D004221 1.1e-67 261.5 490 49.4
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 1.4e-67 261.2 489 49.9
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 1.8e-67 260.8 489 49.7
CDE05G2426 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 1.2e-66 258.1 486 50.6
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 3.5e-66 256.5 482 48.1
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 1.7e-65 254.2 482 48.3
QL04p003768 Quercus lobata HOM05D003599 ORTHO05D004221 6.5e-65 252.3 552 37.1
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 2.5e-64 250.4 482 47.9
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 2.5e-64 250.4 462 51.9
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 9.5e-64 248.4 489 49.7
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 9.5e-64 248.4 481 49.9
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 6.1e-55 219.2 470 48.3
MBI01_g43277_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 6.1e-55 219.2 393 57.5
TAR369G0496 Trochodendron aralioides HOM05D003599 ORTHO05D004221 1.0e-54 218.4 347 62.5
MBI01_g15744_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.2e-53 214.9 366 59.6
SGA_v2.0_scaffold260G45866 Striga asiatica HOM05D003599 ORTHO05D004221 1.5e-53 214.5 451 51.4
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 5.8e-53 212.6 484 47.1
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 4.1e-51 206.5 446 50.4
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 3.5e-50 203.4 499 39.7
Actinidia32321 Actinidia chinensis HOM05D003599 ORTHO05D004221 3.9e-49 199.9 450 42.4
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 9.5e-48 195.3 429 42.7
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 2.8e-47 193.7 429 48.0
SGA_v2.0_scaffold5G03126 Striga asiatica HOM05D003599 ORTHO05D004221 3.1e-46 190.3 446 47.8
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 1.5e-45 188.0 506 42.1
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 4.4e-45 186.4 493 39.1
Lalb_Chr20g0108091 Lupinus albus HOM05D003599 ORTHO05D004221 2.9e-44 183.7 192 53.1
Cpa.g.sc234.1 Carica papaya HOM05D003599 ORTHO05D004221 3.7e-44 183.3 182 60.4
Actinidia31044 Actinidia chinensis HOM05D003599 ORTHO05D004221 1.9e-43 181.0 200 57.5
TPR.G26308 Trifolium pratense HOM05D003599 ORTHO05D004221 1.9e-43 181.0 392 48.2
Lalb_Chr20g0108081 Lupinus albus HOM05D003599 ORTHO05D004221 3.5e-42 176.8 185 58.9
vmacro13648 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 6.0e-42 176.0 165 58.2
MBI01_g25789_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 1.9e-40 171.0 171 53.2
CDE05G3296 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 4.7e-39 166.4 314 57.3
SMO141G0154 Selaginella moellendorffii HOM05D003599 ORTHO05D004221 1.8e-38 164.5 397 43.6
BcaNung06096 Brassica carinata HOM05D003599 ORTHO05D004221 6.8e-38 162.5 192 49.0
Cpa.g.sc945.2 Carica papaya HOM05D003599 ORTHO05D004221 4.4e-37 159.8 165 51.5
QL04p004701 Quercus lobata HOM05D000311 ORTHO05D000183 9.9e-37 158.7 359 37.6
Actinidia31045 Actinidia chinensis HOM05D003599 ORTHO05D004221 3.5e-34 150.2 156 55.1
Actinidia31687 Actinidia chinensis HOM05D003599 ORTHO05D004221 6.6e-33 146.0 184 47.3
BolC8t50358H Brassica oleracea HOM05D003599 ORTHO05D004221 2.4e-30 137.5 128 56.2
Actinidia31688 Actinidia chinensis HOM05D003599 ORTHO05D004221 5.8e-29 132.9 299 36.8
CBR_g110 Chara braunii HOM05D003599 ORTHO05D004221 5.8e-29 132.9 484 37.2
Actinidia28306 Actinidia chinensis HOM05D003599 ORTHO05D004221 3.6e-23 113.6 119 62.2
QL04p003812 Quercus lobata HOM05D003599 ORTHO05D004221 4.7e-23 113.2 116 57.8
QL04p004437 Quercus lobata HOM05D003599 ORTHO05D004221 1.5e-21 108.2 114 59.6
SHI28922 Sapria himalayana HOM05D003599 ORTHO05D004221 2.0e-21 107.8 210 42.9
VMungo1215G1265 Vigna mungo HOM05D003599 ORTHO05D004221 2.4e-19 100.9 77 71.4
TPR.G12134 Trifolium pratense HOM05D003599 ORTHO05D004221 9.6e-16 89.0 70 67.1
SHI28920 Sapria himalayana HOM05D003599 ORTHO05D004221 9.0e-14 82.4 119 41.2
SHI28921 Sapria himalayana HOM05D003599 ORTHO05D004221 7.6e-13 79.3 45 82.2
QL93p0073_0296 Quercus lobata HOM05D003599 ORTHO05D004221 1.6e-10 71.6 82 52.4
BcaC05g25466 Brassica carinata HOM05D001390 ORTHO05D001522 6.7e-09 66.2 155 31.6
ECA170G0003 Erigeron canadensis HOM05D001390 ORTHO05D013105 1.9e-08 64.7 115 35.7
QL04p004575 Quercus lobata HOM05D000311 ORTHO05D000183 1.1e-06 58.9 105 46.7
CBR_g37662 Chara braunii HOM05D001390 ORTHO05D001522 9.0e-06 55.8 142 26.8
Haze_15657 Corylus avellana HOM05D001390 ORTHO05D001522 9.0e-06 55.8 123 31.7


User provided reference genes

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