Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 3.4e-138 495.0 244 100.0
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.9e-70 268.9 236 58.1
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.7e-68 263.5 235 57.4
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.1e-67 260.8 235 55.7
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.6e-66 256.1 235 56.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.4e-66 255.8 232 56.9
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 5.9e-66 255.0 247 56.3
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.2e-65 253.1 229 56.8
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.2e-65 253.1 231 58.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.5e-65 251.1 235 54.5
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-64 250.8 235 54.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.4e-64 250.4 237 54.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.9e-64 250.0 239 55.2
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.9e-64 250.0 239 55.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.9e-64 250.0 192 63.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-64 249.2 223 58.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 5.5e-64 248.4 235 54.5
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 9.4e-64 247.7 232 54.3
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.6e-63 246.9 234 54.3
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.1e-63 246.5 235 54.9
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.1e-63 246.5 233 56.7
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 3.6e-63 245.7 233 55.4
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 3.6e-63 245.7 242 52.9
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.7e-63 245.4 240 52.9
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 6.1e-63 245.0 240 54.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 6.1e-63 245.0 235 54.0
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 6.1e-63 245.0 233 54.9
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 8.0e-63 244.6 228 54.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.0e-63 244.6 228 54.8
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-62 244.2 233 53.2
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-62 244.2 242 52.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.0e-62 244.2 239 53.6
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.4e-62 243.8 239 53.6
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.8e-62 243.4 235 53.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 2.3e-62 243.0 233 52.4
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.0e-62 242.7 229 55.9
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 6.7e-62 241.5 233 52.4
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.8e-62 241.1 228 53.9
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.8e-62 241.1 225 55.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.1e-61 240.7 233 53.2
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.1e-61 240.7 230 54.8
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.1e-61 240.7 232 53.0
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.5e-61 240.4 232 54.3
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.5e-61 240.4 237 52.3
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 2.0e-61 240.0 233 54.5
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.6e-61 239.6 232 53.0
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.6e-61 239.6 228 54.8
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.6e-61 239.6 232 55.6
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 4.4e-61 238.8 235 53.6
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.7e-61 238.4 233 51.9
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 7.4e-61 238.0 227 54.2
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.7e-61 237.7 238 52.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.3e-60 237.3 237 51.1
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.8e-60 236.1 232 53.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 3.7e-60 235.7 232 54.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 4.8e-60 235.3 235 53.2
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 6.3e-60 235.0 233 50.6
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.2e-60 234.6 237 52.3
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.1e-59 234.2 227 52.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.1e-59 234.2 233 51.9
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.1e-59 232.6 234 51.7
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.1e-59 232.6 233 50.2
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.1e-59 232.3 231 49.8
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 4.1e-59 232.3 234 54.7
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.3e-59 231.9 233 52.8
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 5.3e-59 231.9 230 54.3
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.0e-59 231.5 277 47.7
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 7.0e-59 231.5 238 50.0
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 9.1e-59 231.1 178 63.5
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 9.1e-59 231.1 323 42.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.2e-58 230.7 233 50.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.2e-58 230.7 226 53.5
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.0e-58 229.9 257 50.2
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.5e-58 228.8 265 50.2
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 5.9e-58 228.4 233 52.4
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 7.7e-58 228.0 233 54.1
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 7.7e-58 228.0 233 54.1
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.0e-57 227.6 231 51.1
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.3e-57 227.3 234 49.6
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.2e-57 226.5 236 51.3
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.8e-57 225.7 247 50.2
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 3.8e-57 225.7 217 53.0
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.0e-57 225.3 265 47.5
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.0e-57 225.3 265 47.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 6.5e-57 224.9 220 53.2
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 6.5e-57 224.9 233 48.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.9e-56 223.4 220 51.4
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.9e-56 223.4 237 49.8
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.9e-56 223.4 236 50.4
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.5e-56 223.0 225 49.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.2e-56 222.6 233 50.2
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.2e-56 222.6 220 54.1
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.5e-56 221.9 233 50.6
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 9.4e-56 221.1 174 59.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.2e-55 220.7 218 51.4
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.1e-55 219.9 174 60.3
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 2.7e-55 219.5 231 50.2
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 2.7e-55 219.5 225 49.8
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 4.7e-55 218.8 233 48.9
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 6.1e-55 218.4 177 59.3
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.4e-54 217.2 170 60.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.8e-54 216.9 233 49.8
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.8e-54 216.9 172 59.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.3e-54 216.5 173 59.5
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.0e-54 216.1 228 50.0
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.0e-54 216.1 224 49.1
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 4.0e-54 215.7 176 57.4
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 6.7e-54 214.9 224 49.1
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 8.8e-54 214.5 241 47.3
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.2e-53 214.2 154 66.9
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.2e-53 214.2 156 62.8
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.5e-53 213.8 174 58.0
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.6e-53 213.0 244 48.8
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.7e-52 210.3 189 56.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.2e-52 209.9 223 48.4
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 3.7e-52 209.1 163 60.1
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 4.8e-52 208.8 252 46.8
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.8e-52 208.8 155 62.6
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 6.3e-52 208.4 156 62.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 6.3e-52 208.4 157 61.1
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 8.2e-52 208.0 246 45.9
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.4e-51 207.2 173 56.6
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.8e-51 206.8 173 56.6
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 9.1e-51 204.5 230 48.3
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.2e-50 204.1 176 54.5
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.6e-50 203.8 158 59.5
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.7e-50 203.0 265 44.9
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 7.7e-50 201.4 157 59.9
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.7e-49 200.3 170 57.6
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.7e-49 200.3 170 57.6
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.2e-49 199.9 171 57.3
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.1e-48 197.6 119 73.9
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.9e-48 196.8 144 62.5
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 3.2e-48 196.1 154 59.1
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 7.2e-48 194.9 221 48.0
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.3e-46 189.9 137 65.0
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 3.0e-46 189.5 233 48.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 5.2e-46 188.7 181 53.6
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 5.2e-46 188.7 160 58.1
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.4e-45 186.0 156 55.8
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 4.8e-44 182.2 219 44.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.1e-43 179.1 143 58.0
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 3.5e-42 176.0 181 53.0
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.7e-42 174.9 126 61.1
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.3e-41 173.3 138 59.4
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.9e-40 170.2 124 63.7
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 6.8e-38 161.8 207 46.4
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 6.8e-38 161.8 207 46.4
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.8e-33 146.0 200 38.5
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.8e-30 137.1 169 46.2
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 6.0e-26 122.1 219 32.9
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 5.6e-24 115.5 119 47.9
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 4.7e-15 85.9 91 44.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.7e-15 85.9 92 45.7
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.8e-14 84.0 64 59.4
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 8.3e-12 75.1 67 52.2
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.6e-07 60.8 48 45.8


User provided reference genes

Program Settings