Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 4.0e-131 471.5 245 100.0
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 9.3e-128 460.3 245 98.0
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 2.9e-105 385.6 248 80.6
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 3.0e-102 375.6 245 77.6
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 8.7e-102 374.0 245 79.6
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 5.7e-101 371.3 247 76.9
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 9.6e-101 370.5 240 78.3
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 8.2e-100 367.5 245 75.1
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 6.9e-99 364.4 247 75.3
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 3.4e-98 362.1 249 76.7
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 1.0e-97 360.5 232 80.2
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 1.3e-97 360.1 243 76.5
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 2.2e-97 359.4 241 77.2
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 2.2e-97 359.4 241 77.2
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 1.4e-96 356.7 229 79.0
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 4.2e-96 355.1 238 77.3
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 4.2e-96 355.1 247 74.5
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 4.2e-96 355.1 243 73.3
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 2.1e-95 352.8 205 83.4
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 3.6e-95 352.1 206 83.0
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.0e-94 350.5 247 73.7
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 6.7e-94 347.8 206 80.6
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 8.7e-94 347.4 208 82.7
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 1.9e-93 346.3 208 82.2
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.5e-93 345.9 200 83.0
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.5e-93 345.9 202 83.2
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 3.3e-93 345.5 247 73.7
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 3.3e-93 345.5 229 77.3
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 4.3e-93 345.1 204 80.9
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 5.7e-93 344.7 242 72.3
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 5.7e-93 344.7 208 79.8
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 7.4e-93 344.4 246 70.3
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 7.4e-93 344.4 199 84.9
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 7.4e-93 344.4 238 72.3
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 9.7e-93 344.0 241 72.2
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 1.3e-92 343.6 202 82.2
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 1.6e-92 343.2 249 71.1
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 2.8e-92 342.4 214 79.9
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 8.2e-92 340.9 199 83.9
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 1.1e-91 340.5 197 82.2
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 1.8e-91 339.7 208 78.8
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 3.1e-91 339.0 232 73.3
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 3.1e-91 339.0 197 83.8
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 6.9e-91 337.8 202 81.7
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 1.2e-90 337.0 209 78.0
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 2.0e-90 336.3 228 74.1
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 3.4e-90 335.5 197 83.2
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 4.5e-90 335.1 202 79.2
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 5.9e-90 334.7 200 81.5
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 6.5e-89 331.3 195 80.0
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 4.2e-88 328.6 196 81.6
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 7.2e-88 327.8 226 73.0
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 7.2e-88 327.8 197 80.7
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 1.2e-87 327.0 208 77.4
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 1.6e-87 326.6 207 78.3
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 3.6e-87 325.5 206 77.2
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 4.6e-87 325.1 197 80.2
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 1.0e-86 323.9 211 75.4
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 1.0e-86 323.9 211 75.4
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 1.4e-86 323.6 200 77.5
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 5.1e-86 321.6 205 77.6
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 1.1e-85 320.5 254 65.4
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 1.1e-85 320.5 210 75.2
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 1.5e-85 320.1 243 69.1
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 2.6e-85 319.3 244 68.9
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 2.6e-85 319.3 252 65.1
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 4.4e-85 318.5 206 77.7
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 5.7e-85 318.2 206 76.2
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 5.7e-85 318.2 206 76.2
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 5.7e-85 318.2 206 76.2
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 7.4e-85 317.8 195 79.0
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 1.7e-84 316.6 206 75.7
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 2.8e-84 315.8 206 75.7
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 6.3e-84 314.7 200 76.5
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 6.3e-84 314.7 208 75.5
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 8.2e-84 314.3 207 73.9
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 1.4e-83 313.5 206 73.8
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 3.1e-83 312.4 206 75.2
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 5.3e-83 311.6 207 74.9
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 2.0e-82 309.7 200 76.0
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 2.6e-82 309.3 197 76.1
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 3.4e-82 308.9 224 71.0
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 4.5e-82 308.5 249 69.5
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 1.1e-80 303.9 208 74.0
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 1.6e-79 300.1 207 72.5
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 2.1e-79 299.7 204 73.0
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 4.7e-79 298.5 199 76.4
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 8.2e-76 287.7 192 71.4
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 7.0e-75 284.6 194 68.6
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 3.8e-73 278.9 201 66.2
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 2.4e-67 259.6 178 78.1
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 2.7e-66 256.1 195 61.0
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.0e-62 244.2 147 80.3
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 7.7e-58 228.0 133 84.2
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 4.2e-56 222.2 235 55.3
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 5.7e-53 211.8 133 78.9
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 5.7e-53 211.8 235 54.5
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 2.7e-50 203.0 198 50.0
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 8.6e-49 198.0 156 66.0
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 5.2e-46 188.7 143 72.7
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 2.6e-45 186.4 183 49.7
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 5.7e-45 185.3 227 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 8.3e-44 181.4 151 57.0
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 3.5e-42 176.0 130 64.6
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 4.7e-39 165.6 97 81.4
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 2.6e-37 159.8 124 68.5
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 6.0e-34 148.7 112 67.9
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 7.3e-32 141.7 121 59.5
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 1.2e-31 141.0 196 40.3
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.6e-31 140.6 98 68.4
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 3.6e-31 139.4 100 71.0
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 3.6e-31 139.4 200 37.5
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 1.1e-30 137.9 136 57.4
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 3.1e-30 136.3 136 48.5
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 5.8e-21 105.5 104 56.7
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.7e-20 104.0 71 64.8
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 1.5e-16 90.9 53 79.2
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 2.4e-14 83.6 51 76.5
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.4e-11 73.6 64 56.2
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 4.6e-10 69.3 55 58.2
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 7.8e-10 68.6 60 56.7
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 5.1e-09 65.9 51 60.8
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 1.5e-08 64.3 43 72.1
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 4.3e-08 62.8 68 52.9
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 4.0e-06 56.2 40 67.5


User provided reference genes

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