Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 0.0e+00 1095.5 544 100.0
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 0.0e+00 1086.2 544 99.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.1e-250 869.8 545 80.0
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.3e-250 868.2 545 80.6
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 9.5e-250 866.7 545 80.4
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 6.8e-248 860.5 545 80.0
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 2.2e-246 855.5 542 79.3
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.9e-245 852.4 545 78.9
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.1e-244 849.0 545 78.5
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 3.1e-240 835.1 545 77.8
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.5e-226 788.9 548 71.4
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.8e-223 777.7 547 71.7
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 4.9e-222 774.6 547 70.7
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.4e-221 773.1 547 70.7
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.4e-221 773.1 496 79.0
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.4e-221 772.3 547 70.6
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 6.0e-220 767.7 552 70.1
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.3e-219 766.5 547 70.6
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.3e-219 765.8 547 70.2
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.1e-218 763.5 546 71.1
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.5e-218 763.1 547 70.0
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 7.4e-218 760.8 553 69.4
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 9.6e-218 760.4 547 70.4
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.6e-217 759.6 547 70.9
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 2.1e-217 759.2 552 69.9
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.8e-217 758.8 545 69.7
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 4.8e-217 758.1 547 70.4
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.4e-216 755.7 547 70.0
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.6e-215 750.7 547 69.7
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.7e-214 749.6 543 70.3
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.2e-213 745.3 551 68.8
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.0e-211 740.3 586 64.5
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.8e-211 739.6 547 68.0
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.7e-211 737.6 528 71.2
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.5e-210 736.5 547 67.8
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 4.3e-210 734.9 552 67.0
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 7.4e-210 734.2 551 67.7
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 9.6e-210 733.8 485 77.3
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 3.7e-209 731.9 552 67.6
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.1e-208 728.8 547 67.6
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.3e-208 728.0 548 68.4
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 5.3e-208 728.0 549 69.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.0e-206 723.8 547 67.1
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.0e-206 723.8 552 65.8
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.9e-206 722.2 552 65.9
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 3.8e-206 721.8 542 67.5
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 3.8e-206 721.8 549 67.0
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 6.5e-206 721.1 514 71.0
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 6.5e-206 721.1 512 71.3
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 6.5e-206 721.1 552 67.0
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 2.5e-205 719.2 549 66.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 5.5e-205 718.0 552 66.7
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 9.3e-205 717.2 544 67.6
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-204 716.8 547 66.7
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-204 716.8 547 66.7
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.2e-204 716.8 546 67.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.1e-204 716.1 547 66.5
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.5e-204 715.3 552 66.7
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 4.6e-204 714.9 551 65.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.9e-204 714.1 547 66.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.3e-203 713.4 552 66.1
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-203 713.0 547 66.4
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-203 713.0 548 66.6
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.3e-203 712.6 547 66.9
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.0e-203 712.2 547 66.5
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 3.9e-203 711.8 547 66.7
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 6.7e-203 711.1 547 66.9
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 8.7e-203 710.7 548 66.6
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 8.7e-203 710.7 548 66.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.9e-202 709.5 547 66.7
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.9e-202 709.5 551 65.3
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.5e-202 709.1 547 66.9
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.5e-202 709.1 552 65.4
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.5e-202 709.1 639 59.2
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 9.7e-202 707.2 549 66.3
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.6e-201 706.4 547 66.5
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.2e-201 706.1 555 65.8
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.8e-201 705.7 545 66.2
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.7e-201 705.3 564 64.0
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 8.2e-201 704.1 551 66.2
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 8.2e-201 704.1 547 65.8
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-200 703.0 549 65.9
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.8e-200 703.0 549 65.2
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.4e-200 702.6 547 66.4
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.4e-200 702.6 545 65.9
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 5.3e-200 701.4 514 68.1
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.2e-199 700.3 548 65.5
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.6e-199 699.1 539 66.8
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.6e-199 699.1 539 66.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 3.4e-199 698.7 512 68.0
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.0e-198 697.2 552 65.2
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.7e-198 696.4 543 65.2
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.9e-198 695.7 546 65.4
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 7.2e-197 691.0 528 67.2
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 4.6e-196 688.3 551 64.4
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.4e-195 686.8 547 64.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 3.9e-195 685.3 549 64.1
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.1e-194 683.7 550 63.8
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.3e-194 682.2 545 64.4
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 5.7e-194 681.4 490 70.4
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.2e-193 677.6 547 64.4
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-192 677.2 547 64.4
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 3.8e-190 668.7 605 59.0
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.2e-189 665.2 572 62.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 7.2e-189 664.5 550 62.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.3e-187 659.4 626 57.8
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.8e-184 649.8 550 62.0
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 5.3e-184 648.3 550 60.9
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-183 647.1 538 62.3
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.5e-183 646.7 546 59.7
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.6e-183 646.0 550 62.2
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 4.5e-183 645.2 511 65.0
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 5.9e-183 644.8 540 60.4
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.3e-182 643.7 548 62.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.8e-182 642.1 548 62.2
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 8.5e-182 641.0 539 61.2
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 9.4e-181 637.5 549 60.3
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.0e-179 634.0 552 59.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.0e-178 629.8 549 61.2
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-176 624.0 491 65.4
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.6e-175 619.4 566 58.5
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 5.2e-171 605.1 547 58.9
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 8.0e-164 581.3 404 71.3
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 2.3e-163 579.7 404 71.0
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 6.6e-158 561.6 484 61.6
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.9e-150 536.2 336 80.1
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 7.3e-149 531.6 584 49.1
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.3e-147 526.6 570 50.0
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 3.4e-146 522.7 690 45.9
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.1e-136 491.1 455 57.6
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 3.2e-136 489.6 491 55.2
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 3.4e-122 443.0 539 48.8
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.8e-114 415.6 273 73.6
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.4e-112 410.2 311 68.8
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.4e-106 389.8 318 66.0
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 8.5e-81 305.4 275 57.1
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.9e-80 304.3 211 70.6
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 9.4e-80 302.0 281 59.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.7e-76 290.0 296 52.4
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 3.4e-74 283.5 219 64.8
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.2e-68 264.2 539 36.5
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 6.7e-62 242.7 591 31.0
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 4.8e-52 209.9 433 34.2
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-43 182.2 186 52.7
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.2e-42 178.7 144 66.7
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.3e-41 175.3 176 54.0
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.6e-39 167.2 121 70.2
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 9.5e-32 142.5 269 34.9
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.4e-30 138.7 114 57.0
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 5.2e-30 136.7 74 86.5
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.2e-23 115.5 285 33.0
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.1e-23 114.8 64 85.9
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.6e-23 114.0 285 32.6
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 9.5e-16 89.4 73 63.0
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.8e-14 85.1 206 27.7
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 5.2e-14 83.6 113 44.2
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 8.4e-12 76.3 68 60.3
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.2e-10 72.4 211 26.5
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.1e-08 65.9 86 39.5
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 9.6e-08 62.8 36 77.8
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.6e-07 62.0 36 80.6
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 3.6e-07 60.8 126 32.5


User provided reference genes

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