Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 6.8e-107 390.6 186 100.0
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 9.3e-88 327.0 153 98.0
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.6e-76 289.7 153 85.0
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 4.0e-75 285.0 153 82.4
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.5e-74 281.6 153 81.7
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 7.6e-74 280.8 153 81.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 7.6e-74 280.8 153 81.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.3e-73 280.0 153 81.0
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.8e-73 278.5 153 79.7
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 4.9e-73 278.1 153 79.7
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 6.5e-73 277.7 153 81.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.5e-73 277.7 153 79.1
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-72 276.9 153 81.0
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.1e-72 276.9 153 79.7
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.1e-72 276.9 153 79.7
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.9e-72 276.2 153 80.4
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.9e-72 276.2 153 79.7
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.9e-72 276.2 153 78.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.5e-72 275.8 153 79.7
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 2.5e-72 275.8 153 79.7
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.2e-72 275.0 153 81.0
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.2e-72 275.0 153 77.8
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.5e-72 274.6 153 80.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.3e-72 273.9 153 81.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.2e-71 273.5 153 79.7
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-71 273.5 153 80.4
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.2e-71 273.5 153 79.1
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.6e-71 273.1 153 79.1
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.6e-71 273.1 153 80.4
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.6e-71 273.1 153 77.8
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.5e-71 271.9 153 78.4
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 4.6e-71 271.6 153 77.8
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 4.6e-71 271.6 153 79.1
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 4.6e-71 271.6 153 81.0
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 6.0e-71 271.2 153 77.8
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.9e-71 270.8 153 77.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 7.9e-71 270.8 152 79.6
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.8e-70 269.6 153 79.1
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.8e-70 269.6 153 77.1
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.8e-70 269.6 153 77.1
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.3e-70 269.2 153 78.4
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 3.0e-70 268.9 153 79.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.9e-70 268.5 153 77.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 5.1e-70 268.1 153 78.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 5.1e-70 268.1 147 79.6
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.7e-70 267.7 153 75.8
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 6.7e-70 267.7 153 77.1
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 6.7e-70 267.7 153 77.1
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 8.7e-70 267.3 153 76.5
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.5e-69 265.8 153 75.8
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.3e-69 265.0 153 77.8
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 7.4e-69 264.2 153 75.8
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.7e-69 263.8 153 77.1
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.6e-68 263.1 153 77.8
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.8e-68 262.3 153 75.8
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 4.8e-68 261.5 153 75.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 8.2e-68 260.8 153 75.2
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.8e-67 259.6 153 76.5
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.8e-67 259.6 153 74.5
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 2.4e-67 259.2 148 78.4
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.4e-67 259.2 145 76.6
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.1e-67 258.8 147 78.2
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.5e-66 256.5 153 73.9
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.0e-66 256.1 152 76.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.6e-66 255.8 153 72.5
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 4.5e-66 255.0 158 72.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 4.5e-66 255.0 153 72.5
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 4.5e-66 255.0 153 72.5
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 4.5e-66 255.0 153 72.5
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 4.5e-66 255.0 147 77.6
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.5e-66 255.0 153 74.5
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 5.9e-66 254.6 153 74.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 5.9e-66 254.6 148 76.4
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 7.7e-66 254.2 153 76.5
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.0e-65 253.8 153 75.8
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.3e-65 253.4 153 73.2
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.7e-65 253.1 153 75.2
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.2e-65 252.7 145 75.9
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.9e-65 252.3 153 73.9
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.9e-65 252.3 153 72.5
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.9e-65 252.3 153 77.1
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.8e-65 251.9 153 73.2
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.0e-65 251.5 147 76.9
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 5.0e-65 251.5 153 75.8
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 6.5e-65 251.1 153 74.5
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 8.5e-65 250.8 153 71.9
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 8.5e-65 250.8 148 77.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.1e-64 250.4 153 75.2
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.9e-64 249.6 153 73.2
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 4.2e-64 248.4 153 71.9
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 4.2e-64 248.4 153 73.2
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 7.2e-64 247.7 139 78.4
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 9.4e-64 247.3 153 73.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.2e-63 246.9 138 76.1
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.6e-63 246.5 153 73.2
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.7e-63 245.7 147 74.8
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.7e-63 245.7 147 75.5
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.7e-63 245.7 155 67.1
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 3.6e-63 245.4 148 75.0
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.6e-63 245.0 148 75.0
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 4.6e-63 245.0 147 75.5
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.1e-63 244.6 153 73.2
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 7.9e-63 244.2 153 73.2
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 7.9e-63 244.2 148 74.3
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 7.9e-63 244.2 147 73.5
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.4e-62 243.4 148 75.0
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.4e-62 243.4 148 75.0
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.4e-62 243.4 155 71.0
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.8e-62 243.0 153 73.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.0e-62 242.3 161 67.7
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 5.1e-62 241.5 149 71.8
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.1e-61 240.4 153 71.9
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.5e-61 240.0 148 71.6
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.5e-61 239.2 153 73.2
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 5.7e-61 238.0 147 72.1
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 9.7e-61 237.3 132 78.8
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.3e-60 236.9 150 70.7
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.7e-60 236.5 163 67.5
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.8e-60 235.7 158 70.9
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.8e-60 235.0 153 69.9
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 8.2e-60 234.2 153 67.3
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.4e-58 228.8 153 69.9
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.9e-58 228.0 153 68.6
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 7.2e-56 221.1 154 66.2
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 5.7e-53 211.5 147 68.0
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 9.7e-53 210.7 133 72.9
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.8e-52 209.1 148 67.6
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.7e-50 201.1 153 60.1
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 6.5e-49 198.0 148 62.8
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.7e-44 182.2 157 55.4
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.2e-39 167.2 115 66.1
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.2e-39 167.2 128 63.3
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.0e-37 159.8 138 52.9
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.4e-35 152.9 79 82.3
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-34 150.2 132 56.1
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 5.0e-33 145.2 105 64.8
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.8e-22 110.2 68 75.0
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.4e-21 105.9 78 66.7
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.4e-21 105.5 73 69.9
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-19 100.1 67 68.7
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.8e-19 100.1 73 67.1
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.8e-19 100.1 65 67.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 1.5e-16 90.5 80 57.5
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 3.3e-16 89.4 80 53.8
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.2e-13 80.9 49 69.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.9e-12 76.3 41 75.6
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.9e-12 76.3 58 55.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 4.9e-12 75.5 67 53.7
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.4e-11 73.9 35 88.6
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.9e-08 63.5 36 77.8


User provided reference genes

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