Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 2.5e-252 875.2 516 100.0
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 7.2e-239 830.5 531 91.7
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 2.1e-166 589.7 517 72.3
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.1e-162 577.4 517 69.8
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 4.8e-158 562.0 512 72.1
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 7.6e-156 554.7 524 64.1
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.0e-152 544.3 517 71.2
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 5.1e-152 542.0 518 65.6
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 3.9e-144 515.8 520 64.8
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.5e-143 513.1 520 63.1
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 3.1e-141 506.1 515 63.1
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 5.8e-140 501.9 520 65.2
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 7.2e-130 468.4 529 57.3
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 1.8e-128 463.8 529 59.4
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 2.6e-124 449.9 456 59.2
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 3.6e-121 439.5 522 58.0
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.8e-117 427.2 530 52.6
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 9.1e-117 424.9 523 57.9
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.7e-115 420.6 501 57.5
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 3.8e-115 419.5 529 53.1
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.2e-114 416.0 528 51.9
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 4.2e-114 416.0 527 56.4
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.6e-113 414.1 527 54.6
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.1e-113 413.7 531 55.2
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 8.0e-113 411.8 532 51.7
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.7e-111 405.6 520 55.6
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 2.2e-110 403.7 506 57.9
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 2.2e-110 403.7 529 51.4
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.3e-110 402.1 529 51.4
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.4e-109 401.0 507 53.5
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.8e-109 400.6 535 51.8
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.4e-109 400.2 514 55.8
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.3e-109 399.1 506 53.4
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 7.0e-109 398.7 525 52.2
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.6e-108 397.5 489 56.9
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.0e-108 397.1 520 56.7
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.6e-108 396.7 520 56.7
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.7e-107 394.0 520 50.6
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.7e-107 394.0 520 56.5
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 3.8e-107 392.9 521 53.7
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 3.8e-107 392.9 502 52.2
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.0e-107 392.5 526 55.7
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 6.5e-107 392.1 509 53.6
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 1.1e-106 391.3 535 54.4
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 3.2e-106 389.8 525 52.0
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 5.5e-106 389.0 504 50.8
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.6e-105 387.5 526 49.0
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.6e-105 387.5 535 50.8
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.1e-105 387.1 526 50.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 4.7e-105 386.0 491 52.1
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 6.1e-105 385.6 451 58.8
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.3e-104 383.6 522 55.0
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.2e-103 381.3 496 51.6
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.0e-103 380.6 524 51.5
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 7.5e-103 378.6 531 54.2
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.8e-102 376.7 530 53.6
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 3.7e-102 376.3 543 51.7
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.3e-102 375.6 531 50.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 8.3e-102 375.2 500 54.6
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.8e-101 374.0 520 48.8
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.8e-101 374.0 500 54.4
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.4e-101 373.6 534 53.6
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.1e-101 372.9 532 53.2
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 9.1e-101 371.7 525 48.8
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.2e-100 371.3 530 51.7
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.0e-99 368.2 532 52.3
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.9e-99 366.7 529 49.3
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.2e-98 363.2 529 49.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 7.2e-98 362.1 543 53.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.1e-97 360.5 529 48.4
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 4.0e-96 356.3 527 52.0
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 4.0e-96 356.3 485 53.4
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 5.2e-96 355.9 532 48.7
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.2e-95 354.8 535 50.5
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 3.4e-95 353.2 490 52.0
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 5.7e-95 352.4 522 50.6
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 4.8e-94 349.4 542 49.1
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 9.1e-93 345.1 538 50.6
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 2.7e-92 343.6 489 49.9
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 7.7e-92 342.0 529 49.9
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 7.7e-92 342.0 460 53.5
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.3e-91 341.3 630 43.7
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 2.3e-91 340.5 459 52.5
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 3.8e-91 339.7 540 48.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.5e-90 335.1 368 64.1
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 2.1e-89 334.0 494 50.0
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 4.0e-88 329.7 483 52.2
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 5.2e-88 329.3 545 48.3
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 5.2e-88 329.3 543 47.3
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.0e-87 327.4 557 45.6
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 5.7e-87 325.9 487 46.6
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.8e-86 323.6 478 53.3
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.4e-85 321.2 403 51.9
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 5.4e-85 319.3 539 47.3
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 5.4e-85 319.3 520 48.8
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 7.0e-85 318.9 504 46.0
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 3.9e-83 313.2 459 50.8
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 3.9e-83 313.2 481 50.7
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.0e-83 312.8 386 53.4
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.1e-82 311.6 506 45.3
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.9e-82 310.8 558 45.9
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 5.6e-82 309.3 468 51.1
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.4e-80 304.7 513 47.2
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 8.9e-80 302.0 559 42.6
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 3.4e-79 300.1 485 50.7
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 4.4e-79 299.7 525 44.4
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.3e-78 298.1 579 40.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-77 294.3 502 46.2
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.6e-76 291.2 523 46.3
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 4.6e-76 289.7 491 48.7
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.8e-72 275.8 508 48.4
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 8.9e-72 275.4 292 58.2
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.0e-71 274.2 503 41.9
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 9.8e-71 271.9 489 46.2
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.2e-70 270.8 464 44.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 5.4e-69 266.2 378 52.9
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 7.3e-66 255.8 491 45.8
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 6.2e-65 252.7 278 58.6
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 6.2e-65 252.7 447 47.4
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 8.1e-65 252.3 286 55.9
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.1e-64 251.9 290 56.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.5e-63 248.1 523 39.0
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.2e-62 244.2 519 42.6
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.1e-61 240.0 455 44.2
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.3e-59 234.2 519 39.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 8.4e-54 215.7 434 43.1
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 3.1e-48 197.2 308 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 5.6e-42 176.4 451 32.2
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 3.5e-36 157.1 478 30.3
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 7.9e-36 156.0 293 40.6
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 4.9e-30 136.7 83 81.9
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 4.9e-30 136.7 468 30.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 7.1e-29 132.9 197 49.7
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.4e-24 117.9 500 30.0
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 2.9e-22 110.9 101 57.4
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 3.2e-21 107.5 78 74.4
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.5e-20 104.0 89 68.5
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.9e-20 102.8 313 31.6
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 1.8e-19 101.7 209 39.2
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.3e-19 101.3 74 70.3
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.0e-19 100.9 100 57.0
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 9.7e-18 95.9 97 50.5
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 3.7e-17 94.0 288 39.9
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.4e-16 91.3 203 36.9
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.9e-15 86.7 167 44.9
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.7e-14 85.1 196 34.2
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.8e-14 84.0 158 39.2
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.4e-13 82.0 333 27.6
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 2.7e-12 77.8 211 35.1
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.1e-10 72.4 211 34.6
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.5e-10 72.0 417 29.3
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 1.7e-09 68.6 371 28.6
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 6.9e-08 63.2 170 30.6
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.0e-07 61.6 77 42.9
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 1.3e-06 58.9 113 42.5
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 5.0e-06 57.0 152 45.4


User provided reference genes

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