Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZUR202 Arachis hypogaea HOM05D000383 ORTHO05D021517 2.1e-41 171.8 80 100.0
arahy.Tifrunner.gnm1.ann1.DUH36G Arachis hypogaea HOM05D001300 ORTHO05D021517 4.3e-26 120.9 55 96.4
arahy.Tifrunner.gnm1.ann1.R607WF Arachis hypogaea HOM05D000383 ORTHO05D021517 4.8e-25 117.5 74 77.0
arahy.Tifrunner.gnm1.ann1.PH2T15 Arachis hypogaea HOM05D000383 ORTHO05D001666 5.9e-23 110.5 51 96.1
arahy.Tifrunner.gnm1.ann1.QUB6RF Arachis hypogaea HOM05D000383 ORTHO05D001666 5.9e-23 110.5 51 96.1
arahy.Tifrunner.gnm1.ann1.1RS262 Arachis hypogaea HOM05D000383 ORTHO05D001666 9.4e-21 103.2 51 86.3
Lj4g0001993 Lotus japonicus HOM05D000383 ORTHO05D001666 4.7e-20 100.9 51 88.2
Ca_22041_v3 Cicer arietinum L. HOM05D000383 ORTHO05D001666 7.9e-20 100.1 51 84.3
Glyma.01G148002 Glycine max HOM05D000383 ORTHO05D021517 7.9e-20 100.1 51 86.3
Glyma.11G040700 Glycine max HOM05D000383 ORTHO05D001666 7.9e-20 100.1 51 86.3
Phvul.002G004100 Phaseolus vulgaris HOM05D000383 ORTHO05D001666 7.9e-20 100.1 51 86.3
Lalb_Chr09g0329611 Lupinus albus HOM05D000383 ORTHO05D001666 1.0e-19 99.8 51 84.3
Medtr4g098930 Medicago truncatula HOM05D000383 ORTHO05D001666 1.0e-19 99.8 51 84.3
Glyma.01G202100 Glycine max HOM05D000383 ORTHO05D001666 2.3e-19 98.6 51 84.3
arahy.Tifrunner.gnm1.ann1.NU762S Arachis hypogaea HOM05D000383 ORTHO05D001666 3.0e-19 98.2 51 82.4
SalBow4G1351 Salvia bowleyana HOM05D000383 ORTHO05D001666 3.9e-19 97.8 51 80.4
Glyma.17G151700 Glycine max HOM05D000383 ORTHO05D001666 5.1e-19 97.4 51 82.4
TPR.G19182 Trifolium pratense HOM05D000383 ORTHO05D001666 8.8e-19 96.7 51 80.4
arahy.Tifrunner.gnm1.ann1.V14AVL Arachis hypogaea HOM05D000383 ORTHO05D021517 1.1e-18 96.3 42 100.0
Glyma.05G069100 Glycine max HOM05D000383 ORTHO05D001666 1.1e-18 96.3 51 80.4
CSS0013120 Camellia sinensis var. sinensis HOM05D000383 ORTHO05D001666 1.5e-18 95.9 51 80.4
CSS0019143 Camellia sinensis var. sinensis HOM05D000383 ORTHO05D001666 1.5e-18 95.9 51 80.4
Nn1g00633 Nelumbo nucifera HOM05D000383 ORTHO05D001666 1.5e-18 95.9 50 82.0
Haze_08306 Corylus avellana HOM05D000383 ORTHO05D001666 2.0e-18 95.5 51 80.4
Lalb_Chr09g0323961 Lupinus albus HOM05D000383 ORTHO05D001666 2.0e-18 95.5 51 84.3
Lalb_Chr16g0379251 Lupinus albus HOM05D000383 ORTHO05D001666 2.0e-18 95.5 51 84.3
QL12p007247 Quercus lobata HOM05D000383 ORTHO05D001666 2.0e-18 95.5 51 80.4
vmacro00353 Vaccinium macrocarpon HOM05D000383 ORTHO05D001666 2.0e-18 95.5 51 80.4
Nitab4.5_0009567g0010 Nicotiana tabacum HOM05D000383 ORTHO05D001666 2.6e-18 95.1 51 80.4
Phvul.003G228000 Phaseolus vulgaris HOM05D000383 ORTHO05D001666 2.6e-18 95.1 51 78.4
Nn6g33681 Nelumbo nucifera HOM05D000383 ORTHO05D001666 3.3e-18 94.7 50 80.0
TAR629G3350 Trochodendron aralioides HOM05D000383 ORTHO05D001666 4.4e-18 94.4 50 80.0
Eucgr.E00317 Eucalyptus grandis HOM05D000383 ORTHO05D001666 5.7e-18 94.0 51 78.4
Nitab4.5_0002055g0020 Nicotiana tabacum HOM05D000383 ORTHO05D001666 5.7e-18 94.0 51 78.4
Peaxi162Scf00084g00716 Petunia axillaris HOM05D000383 ORTHO05D001666 5.7e-18 94.0 51 78.4
Solyc08g077330.3 Solanum lycopersicum HOM05D000383 ORTHO05D001666 5.7e-18 94.0 51 78.4
Sopen08g025910 Solanum pennellii HOM05D000383 ORTHO05D001666 5.7e-18 94.0 51 78.4
PGSC0003DMG400001848 Solanum tuberosum HOM05D000383 ORTHO05D001666 5.7e-18 94.0 51 78.4
Ciclev10032508m.g Citrus clementina HOM05D000383 ORTHO05D001666 7.4e-18 93.6 51 78.4
Dinv28912 Davidia involucrata HOM05D000383 ORTHO05D001666 7.4e-18 93.6 51 78.4
Hma1.2p1_0311F.1_g121250 Hydrangea macrophylla HOM05D000383 ORTHO05D001666 7.4e-18 93.6 51 80.4
PSO782G5317 Papaver somniferum HOM05D000383 ORTHO05D001666 7.4e-18 93.6 49 81.6
vmacro14144 Vaccinium macrocarpon HOM05D000383 ORTHO05D001666 7.4e-18 93.6 51 74.5
Haze_08309 Corylus avellana HOM05D000383 ORTHO05D001666 9.7e-18 93.2 51 78.4
Lj8C289G1 Lonicera japonica HOM05D000383 ORTHO05D001666 9.7e-18 93.2 51 78.4
COL.COLO4_17115 Corchorus olitorius HOM05D000383 ORTHO05D001666 1.3e-17 92.8 51 76.5
FAN08G3619 Fragaria x ananassa HOM05D000383 ORTHO05D001666 1.7e-17 92.4 51 78.4
FAN13G1006 Fragaria x ananassa HOM05D000383 ORTHO05D001666 1.7e-17 92.4 51 78.4
Sopen08g003030 Solanum pennellii HOM05D000383 ORTHO05D001666 1.7e-17 92.4 51 80.4
Thecc.03G234700 Theobroma cacao HOM05D000383 ORTHO05D001666 1.7e-17 92.4 51 76.5
CAN.G572.39 Capsicum annuum HOM05D000383 ORTHO05D001666 2.2e-17 92.0 51 76.5
Manes.17G018100 Manihot esculenta HOM05D000383 ORTHO05D001666 2.2e-17 92.0 51 78.4
CSS0012644 Camellia sinensis var. sinensis HOM05D000383 ORTHO05D001666 2.8e-17 91.7 51 78.4
Duzib084G0514 Durio zibethinus HOM05D000383 ORTHO05D001666 2.8e-17 91.7 51 76.5
Gorai.008G229300 Gossypium raimondii HOM05D000383 ORTHO05D001666 2.8e-17 91.7 51 76.5
CAN.G845.30 Capsicum annuum HOM05D000383 ORTHO05D001666 3.7e-17 91.3 51 78.4
FAN18G3320 Fragaria x ananassa HOM05D000383 ORTHO05D001666 3.7e-17 91.3 51 76.5
Gohir.A08G159900 Gossypium hirsutum HOM05D000383 ORTHO05D001666 3.7e-17 91.3 50 76.0
Gohir.D08G180300 Gossypium hirsutum HOM05D000383 ORTHO05D001666 3.7e-17 91.3 50 76.0
Gohir.D12G213700 Gossypium hirsutum HOM05D000383 ORTHO05D001666 3.7e-17 91.3 51 74.5
Gorai.004G188800 Gossypium raimondii HOM05D000383 ORTHO05D001666 3.7e-17 91.3 50 76.0
Manes.17G018000 Manihot esculenta HOM05D000383 ORTHO05D001666 3.7e-17 91.3 51 76.5
Rhsim07G0121500 Rhododendron simsii HOM05D000383 ORTHO05D001666 3.7e-17 91.3 51 74.5
PGSC0003DMG400020497 Solanum tuberosum HOM05D000383 ORTHO05D001666 3.7e-17 91.3 51 78.4
Actinidia25941 Actinidia chinensis HOM05D000383 ORTHO05D001666 4.8e-17 90.9 51 74.5
CiPaw.12G060000 Carya illinoinensis HOM05D000383 ORTHO05D001666 4.8e-17 90.9 51 74.5
Duzib205G0382 Durio zibethinus HOM05D000383 ORTHO05D001666 4.8e-17 90.9 51 74.5
PSO478G3108 Papaver somniferum HOM05D000383 ORTHO05D001666 4.8e-17 90.9 49 79.6
Sabra03G0056700 Salix brachista HOM05D000383 ORTHO05D001666 4.8e-17 90.9 51 76.5
RhsimUnG0093600 Rhododendron simsii HOM05D000383 ORTHO05D001666 6.3e-17 90.5 51 76.5
TAR636G0573 Trochodendron aralioides HOM05D000383 ORTHO05D001666 6.3e-17 90.5 50 74.0
Potri.001G147200 Populus trichocarpa HOM05D000383 ORTHO05D001666 8.2e-17 90.1 51 70.6
AUR62018781 Chenopodium quinoa HOM05D000383 ORTHO05D001666 1.1e-16 89.7 51 76.5
Prupe.5G047300 Prunus persica HOM05D000383 ORTHO05D001666 1.1e-16 89.7 51 76.5
Ah.12g053700 Amaranthus hybridus HOM05D000383 ORTHO05D001666 1.4e-16 89.4 51 74.5
Cfa012378 Carpinus fangiana HOM05D000383 ORTHO05D001666 1.4e-16 89.4 51 74.5
CiPaw.11G087300 Carya illinoinensis HOM05D000383 ORTHO05D001666 1.4e-16 89.4 51 76.5
Cc08_g01830 Coffea canephora HOM05D000383 ORTHO05D001666 1.4e-16 89.4 51 78.4
Cc08_g01860 Coffea canephora HOM05D000383 ORTHO05D001666 1.4e-16 89.4 51 78.4
RcHm_v2.0_Chr7g0208241 Rosa chinensis HOM05D000383 ORTHO05D001666 1.4e-16 89.4 50 76.0
TWI60G1430 Tripterygium wilfordii HOM05D000383 ORTHO05D001666 1.4e-16 89.4 51 76.5
GSVIVG01013208001 Vitis vinifera HOM05D000383 ORTHO05D001666 1.4e-16 89.4 50 74.0
EL10As14g24076 Beta vulgaris HOM05D000383 ORTHO05D001666 1.8e-16 89.0 51 76.5
Potri.003G087000 Populus trichocarpa HOM05D000383 ORTHO05D001666 2.4e-16 88.6 51 74.5
HanXRQChr17g0535741 Helianthus annuus HOM05D000383 ORTHO05D001666 3.1e-16 88.2 51 76.5
Hund14432 Selenicereus undatus HOM05D000383 ORTHO05D001666 3.1e-16 88.2 51 74.5
TWI15G0377 Tripterygium wilfordii HOM05D000383 ORTHO05D001666 3.1e-16 88.2 51 76.5
AUR62007220 Chenopodium quinoa HOM05D000383 ORTHO05D001666 5.3e-16 87.4 51 74.5
Hund11273 Selenicereus undatus HOM05D000383 ORTHO05D001666 5.3e-16 87.4 51 74.5
Actinidia10878 Actinidia chinensis HOM05D000383 ORTHO05D001666 7.0e-16 87.0 51 74.5
Actinidia31474 Actinidia chinensis HOM05D000383 ORTHO05D001666 1.6e-15 85.9 51 74.5
Sc22g0001360 Simmondsia chinensis HOM05D000383 ORTHO05D001666 1.6e-15 85.9 51 70.6
ECA246G1502 Erigeron canadensis HOM05D000383 ORTHO05D001666 2.0e-15 85.5 51 74.5
Migut.A00275 Erythranthe guttata HOM05D000383 ORTHO05D001666 2.0e-15 85.5 51 70.6
PGR042G0977 Punica granatum HOM05D000383 ORTHO05D001666 2.0e-15 85.5 51 76.5
DCAR_024980 Daucus carota HOM05D000383 ORTHO05D001666 2.6e-15 85.1 51 70.6
Dinv25181 Davidia involucrata HOM05D000383 ORTHO05D001666 3.5e-15 84.7 50 74.0
Sabra01G0115700 Salix brachista HOM05D000383 ORTHO05D001666 3.5e-15 84.7 50 74.0
MSTRG.25874 Avicennia marina HOM05D000383 ORTHO05D001666 4.5e-15 84.3 51 70.6
MELO3C003371.2 Cucumis melo HOM05D000383 ORTHO05D001666 7.7e-15 83.6 51 72.5
Lj2A247T89 Lonicera japonica HOM05D000383 ORTHO05D001666 7.7e-15 83.6 51 68.6
CANSAT21G0476 Cannabis sativa HOM05D000383 ORTHO05D001666 1.0e-14 83.2 50 70.0
arahy.Tifrunner.gnm1.ann1.596IVE Arachis hypogaea HOM05D000383 ORTHO05D021517 1.3e-14 82.8 36 100.0
HPP92_014866 Vanilla planifolia HOM05D000383 ORTHO05D001666 1.7e-14 82.4 49 75.5
MD06G1041000 Malus domestica HOM05D000383 ORTHO05D001666 2.2e-14 82.0 51 72.5
ClCG09G012380 Citrullus lanatus HOM05D000383 ORTHO05D001666 2.9e-14 81.6 50 72.0
CsaV3_3G049550 Cucumis sativus L. HOM05D000383 ORTHO05D001666 2.9e-14 81.6 50 72.0
Sed0009214 Sechium edule HOM05D000383 ORTHO05D001666 2.9e-14 81.6 50 72.0
DCAR_024979 Daucus carota HOM05D000383 ORTHO05D001666 8.5e-14 80.1 51 66.7
THA.LOC104820141 Tarenaya hassleriana HOM05D000383 ORTHO05D001666 8.5e-14 80.1 50 72.0
Os07g0496250 Oryza sativa ssp. japonica HOM05D000383 ORTHO05D001666 3.2e-13 78.2 50 68.0
Peaxi162Scf00102g00734 Petunia axillaris HOM05D000383 ORTHO05D001666 7.2e-13 77.0 74 52.7
Nitab4.5_0010461g0020 Nicotiana tabacum HOM05D000383 ORTHO05D001666 1.6e-12 75.9 51 70.6
SEGI_36846 Sequoiadendron giganteum HOM05D000383 ORTHO05D001666 6.1e-12 73.9 48 60.4
Gohir.A12G211100 Gossypium hirsutum HOM05D000383 ORTHO05D001666 2.3e-11 72.0 51 66.7
FvH4_5g21120 Fragaria vesca HOM05D000383 ORTHO05D001666 3.5e-07 58.2 34 76.5
SEGI_40210 Sequoiadendron giganteum HOM05D000383 ORTHO05D001666 1.3e-06 56.2 49 51.0
Atru.chr6.1781 Acer truncatum HOM05D000383 ORTHO05D001666 2.2e-06 55.5 31 74.2
Ah.12g054020 Amaranthus hybridus HOM05D000383 ORTHO05D001666 2.2e-06 55.5 51 47.1
AUR62007161 Chenopodium quinoa HOM05D000383 ORTHO05D001666 5.0e-06 54.3 48 45.8
AUR62018849 Chenopodium quinoa HOM05D000383 ORTHO05D001666 5.0e-06 54.3 48 45.8
ATR0665G566 Amborella trichopoda HOM05D000383 ORTHO05D001666 6.5e-06 53.9 31 71.0
CsaV3_7G001510 Cucumis sativus L. HOM05D000383 ORTHO05D003501 6.5e-06 53.9 51 45.1


User provided reference genes

Program Settings