Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 4.6e-58 227.6 112 100.0
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 6.5e-36 154.1 121 69.4
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 6.5e-36 154.1 121 69.4
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 4.4e-32 141.4 121 62.8
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 4.8e-31 137.9 121 62.8
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 1.4e-30 136.3 121 62.0
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 2.4e-30 135.6 104 67.3
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 4.1e-30 134.8 121 61.2
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.2e-29 133.3 120 60.8
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 4.5e-29 131.3 121 59.5
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 1.0e-28 130.2 121 59.5
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 1.3e-28 129.8 121 58.7
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.3e-28 129.8 116 61.2
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 1.3e-28 129.8 116 61.2
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 1.3e-28 129.8 121 61.2
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 1.3e-28 129.8 119 59.7
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 1.7e-28 129.4 121 57.9
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 1.7e-28 129.4 122 59.8
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 2.2e-28 129.0 123 59.3
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 3.8e-28 128.3 121 57.0
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 3.8e-28 128.3 102 64.7
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 5.0e-28 127.9 121 57.0
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 5.0e-28 127.9 121 59.5
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 1.4e-27 126.3 120 57.5
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 1.4e-27 126.3 110 60.0
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 5.5e-27 124.4 119 58.0
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 5.5e-27 124.4 120 57.5
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 7.2e-27 124.0 103 64.1
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 7.2e-27 124.0 122 56.6
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 7.2e-27 124.0 110 60.0
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 9.4e-27 123.6 119 56.3
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 9.4e-27 123.6 121 55.4
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 1.2e-26 123.2 120 55.8
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 1.6e-26 122.9 120 56.7
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 2.1e-26 122.5 120 56.7
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 2.1e-26 122.5 120 56.7
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 2.1e-26 122.5 110 58.2
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 2.7e-26 122.1 120 56.7
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 2.7e-26 122.1 120 56.7
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 2.7e-26 122.1 120 56.7
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 2.7e-26 122.1 120 56.7
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 2.7e-26 122.1 120 56.7
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 2.7e-26 122.1 97 66.0
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 3.6e-26 121.7 121 57.0
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 3.6e-26 121.7 121 54.5
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 6.1e-26 120.9 121 56.2
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 6.1e-26 120.9 121 56.2
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 6.1e-26 120.9 121 55.4
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 8.0e-26 120.6 94 67.0
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 8.0e-26 120.6 85 70.6
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 1.0e-25 120.2 120 55.8
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 1.0e-25 120.2 120 55.8
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 1.0e-25 120.2 93 66.7
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 3.0e-25 118.6 93 64.5
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 3.0e-25 118.6 111 59.5
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 3.0e-25 118.6 100 63.0
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 3.9e-25 118.2 100 60.0
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 3.9e-25 118.2 120 54.2
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 5.2e-25 117.9 93 64.5
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 6.7e-25 117.5 151 48.3
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 6.7e-25 117.5 111 58.6
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 6.7e-25 117.5 103 59.2
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 1.1e-24 116.7 121 53.7
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.1e-24 116.7 110 55.5
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 1.5e-24 116.3 121 52.9
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 2.0e-24 115.9 122 54.9
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.3e-24 115.2 103 60.2
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 7.4e-24 114.0 149 47.0
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 9.7e-24 113.6 120 53.3
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 9.7e-24 113.6 120 53.3
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 9.7e-24 113.6 120 53.3
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 1.3e-23 113.2 124 53.2
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 1.3e-23 113.2 98 59.2
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 4.8e-23 111.3 121 51.2
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 3.1e-22 108.6 91 63.7
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 5.3e-22 107.8 118 50.8
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 9.1e-22 107.1 110 54.5
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 3.5e-21 105.1 120 48.3
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 5.9e-21 104.4 89 62.9
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 7.7e-21 104.0 118 52.5
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 8.5e-20 100.5 113 50.4
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 1.5e-19 99.8 104 51.9
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 2.5e-19 99.0 180 38.9
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 2.5e-19 99.0 118 46.6
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 2.7e-18 95.5 101 48.5
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 1.2e-16 90.1 70 62.9
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 3.3e-16 88.6 70 62.9
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 5.7e-16 87.8 147 40.8
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 1.3e-15 86.7 70 61.4
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 3.7e-15 85.1 70 60.0
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 3.7e-15 85.1 70 62.9
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 2.0e-13 79.3 70 57.1
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 7.7e-13 77.4 70 54.3
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 9.4e-11 70.5 74 51.4
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 2.2e-07 59.3 70 48.6
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 3.7e-07 58.5 41 63.4


User provided reference genes

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