Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZUJ3H1 Arachis hypogaea HOM05D005739 ORTHO05D083715 3.8e-54 214.5 106 100.0
arahy.Tifrunner.gnm1.ann1.Q9UH73 Arachis hypogaea HOM05D005739 ORTHO05D007740 4.0e-11 71.6 35 97.1
arahy.Tifrunner.gnm1.ann1.3ZZ8UM Arachis hypogaea HOM05D000187 ORTHO05D000230 2.0e-10 69.3 35 94.3
GSVIVG01012654001 Vitis vinifera HOM05D005739 ORTHO05D007740 2.0e-10 69.3 35 91.4
Atru.chr10.2176 Acer truncatum HOM05D005739 ORTHO05D007740 7.6e-10 67.4 35 88.6
Cfa000251 Carpinus fangiana HOM05D005739 ORTHO05D007740 7.6e-10 67.4 35 88.6
Haze_06773 Corylus avellana HOM05D005739 ORTHO05D007740 7.6e-10 67.4 35 88.6
TPR.G37091 Trifolium pratense HOM05D005739 ORTHO05D007740 7.6e-10 67.4 35 88.6
arahy.Tifrunner.gnm1.ann1.GPHX1M Arachis hypogaea HOM05D005739 ORTHO05D007740 1.3e-09 66.6 35 85.7
arahy.Tifrunner.gnm1.ann1.HAY2RB Arachis hypogaea HOM05D005739 ORTHO05D007740 1.3e-09 66.6 35 85.7
Potri.011G000100 Populus trichocarpa HOM05D005739 ORTHO05D007740 1.3e-09 66.6 35 85.7
Sabra11G0000600 Salix brachista HOM05D005739 ORTHO05D007740 1.3e-09 66.6 35 85.7
SalBow8G1417 Salvia bowleyana HOM05D005739 ORTHO05D007740 1.3e-09 66.6 35 85.7
SGA_v2.0_scaffold4G01929 Striga asiatica HOM05D005739 ORTHO05D007740 1.3e-09 66.6 35 85.7
Ciclev10015698m.g Citrus clementina HOM05D005739 ORTHO05D007740 1.7e-09 66.2 35 85.7
Psat4g007680 Pisum sativum HOM05D005739 ORTHO05D007740 1.7e-09 66.2 35 85.7
QL05p074082 Quercus lobata HOM05D005739 ORTHO05D007740 1.7e-09 66.2 35 85.7
AL6G48370 Arabidopsis lyrata HOM05D005739 ORTHO05D007740 2.2e-09 65.9 35 82.9
Glyma.07G258900 Glycine max HOM05D005739 ORTHO05D007740 2.2e-09 65.9 35 82.9
Lsat_1_v5_gn_4_60101 Lactuca sativa HOM05D005739 ORTHO05D007740 2.2e-09 65.9 35 85.7
Carub.0006s3279 Capsella rubella HOM05D005739 ORTHO05D007740 2.9e-09 65.5 35 82.9
COL.COLO4_31742 Corchorus olitorius HOM05D005739 ORTHO05D007740 2.9e-09 65.5 35 82.9
CsaV3_6G049150 Cucumis sativus L. HOM05D005739 ORTHO05D007740 2.9e-09 65.5 35 88.6
Glyma.13G206500 Glycine max HOM05D005739 ORTHO05D007740 2.9e-09 65.5 32 93.8
Glyma.15G106200 Glycine max HOM05D005739 ORTHO05D007740 2.9e-09 65.5 32 93.8
Peaxi162Scf00203g01110 Petunia axillaris HOM05D005739 ORTHO05D007740 2.9e-09 65.5 35 85.7
Thecc.06G217300 Theobroma cacao HOM05D005739 ORTHO05D007740 2.9e-09 65.5 35 82.9
Aa31LG9G9620 Aethionema arabicum HOM05D005739 ORTHO05D007740 3.8e-09 65.1 35 80.0
Ca_21095_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 3.8e-09 65.1 33 90.9
Ca_30203_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 3.8e-09 65.1 33 90.9
Migut.M01296 Erythranthe guttata HOM05D005739 ORTHO05D007740 3.8e-09 65.1 35 82.9
Phvul.003G077000 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 3.8e-09 65.1 35 80.0
Actinidia11847 Actinidia chinensis HOM05D005739 ORTHO05D007740 4.9e-09 64.7 35 82.9
AT4G04880 Arabidopsis thaliana HOM05D005739 ORTHO05D007740 4.9e-09 64.7 35 80.0
Dinv20033 Davidia involucrata HOM05D005739 ORTHO05D007740 4.9e-09 64.7 35 82.9
Nn1g03584 Nelumbo nucifera HOM05D005739 ORTHO05D007740 4.9e-09 64.7 35 82.9
VMungo1215G0361 Vigna mungo HOM05D005739 ORTHO05D007740 4.9e-09 64.7 35 80.0
CARHR252690 Cardamine hirsuta HOM05D005739 ORTHO05D007740 6.4e-09 64.3 35 80.0
ClCG01G022090 Citrullus lanatus HOM05D005739 ORTHO05D007740 6.4e-09 64.3 35 85.7
Hma1.2p1_0813F.1_g222580 Hydrangea macrophylla HOM05D005739 ORTHO05D007740 6.4e-09 64.3 35 80.0
Os07g0661000 Oryza sativa ssp. japonica HOM05D005739 ORTHO05D007740 6.4e-09 64.3 68 48.5
Rhsim02G0110500 Rhododendron simsii HOM05D005739 ORTHO05D007740 6.4e-09 64.3 35 82.9
Sp6g04100 Schrenkiella parvula HOM05D005739 ORTHO05D007740 6.4e-09 64.3 35 80.0
BcaC04g21334 Brassica carinata HOM05D005739 ORTHO05D007740 8.4e-09 63.9 64 59.4
C09p33050 Brassica napus HOM05D005739 ORTHO05D007740 8.4e-09 63.9 64 59.4
BolC9t56140H Brassica oleracea HOM05D005739 ORTHO05D007740 8.4e-09 63.9 64 59.4
CiPaw.10G069300 Carya illinoinensis HOM05D005739 ORTHO05D007740 8.4e-09 63.9 35 82.9
Thhalv10028765m.g Eutrema salsugineum HOM05D005739 ORTHO05D007740 8.4e-09 63.9 35 77.1
Nitab4.5_0002155g0060 Nicotiana tabacum HOM05D005739 ORTHO05D007740 8.4e-09 63.9 35 80.0
Nitab4.5_0007448g0040 Nicotiana tabacum HOM05D005739 ORTHO05D007740 8.4e-09 63.9 35 80.0
Phvul.006G151100 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 8.4e-09 63.9 44 72.7
MSTRG.15974 Avicennia marina HOM05D005739 ORTHO05D007740 1.1e-08 63.5 34 82.4
BcaB01g01842 Brassica carinata HOM05D005739 ORTHO05D007740 1.1e-08 63.5 35 80.0
vmacro15817 Vaccinium macrocarpon HOM05D005739 ORTHO05D007740 1.1e-08 63.5 35 80.0
Dinv13869 Davidia involucrata HOM05D005739 ORTHO05D007740 1.4e-08 63.2 35 80.0
Dinv17816 Davidia involucrata HOM05D005739 ORTHO05D007740 1.4e-08 63.2 35 80.0
Sed0020639 Sechium edule HOM05D005739 ORTHO05D007740 1.4e-08 63.2 35 82.9
Duzib235G0413 Durio zibethinus HOM05D005739 ORTHO05D007740 2.4e-08 62.4 84 46.4
TAR627G1089 Trochodendron aralioides HOM05D005739 ORTHO05D007740 2.4e-08 62.4 35 80.0
DCAR_008137 Daucus carota HOM05D005739 ORTHO05D007740 3.2e-08 62.0 35 77.1
HanXRQChr16g0515931 Helianthus annuus HOM05D005739 ORTHO05D007740 3.2e-08 62.0 35 80.0
A09p26050 Brassica napus HOM05D005739 ORTHO05D007740 4.1e-08 61.6 56 57.1
BraA09t38171Z Brassica rapa HOM05D005739 ORTHO05D007740 4.1e-08 61.6 56 57.1
CSS0045804 Camellia sinensis var. sinensis HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 80.0
AUR62012674 Chenopodium quinoa HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 80.0
Eucgr.D01304 Eucalyptus grandis HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 80.0
FvH4_3g02490 Fragaria vesca HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 85.7
Lj1C1227G9 Lonicera japonica HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 80.0
Prupe.4G024100 Prunus persica HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 82.9
Solyc10g005310.3 Solanum lycopersicum HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 77.1
PGSC0003DMG400011257 Solanum tuberosum HOM05D005739 ORTHO05D007740 4.1e-08 61.6 35 77.1
VMungo0540G2038 Vigna mungo HOM05D005739 ORTHO05D007740 4.1e-08 61.6 32 87.5
ATR0752G010 Amborella trichopoda HOM05D005739 ORTHO05D007740 7.1e-08 60.8 37 70.3
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 7.1e-08 60.8 69 53.6
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 7.1e-08 60.8 69 53.6
MELO3C007380.2 Cucumis melo HOM05D005739 ORTHO05D007740 7.1e-08 60.8 34 82.4
PSO832G4144 Papaver somniferum HOM05D005739 ORTHO05D007740 7.1e-08 60.8 35 68.6
Sed0022137 Sechium edule HOM05D005739 ORTHO05D007740 7.1e-08 60.8 35 80.0
arahy.Tifrunner.gnm1.ann1.39644B Arachis hypogaea HOM05D005739 ORTHO05D007740 9.2e-08 60.5 35 80.0
arahy.Tifrunner.gnm1.ann1.7V36PE Arachis hypogaea HOM05D005739 ORTHO05D007740 9.2e-08 60.5 35 80.0
PGR004G1404 Punica granatum HOM05D005739 ORTHO05D007740 1.2e-07 60.1 35 82.9
TWI38G1065 Tripterygium wilfordii HOM05D005739 ORTHO05D007740 1.2e-07 60.1 35 80.0
Zm00001eb110820 Zea mays HOM05D005739 ORTHO05D007740 1.2e-07 60.1 34 76.5
Gohir.D06G153000 Gossypium hirsutum HOM05D005739 ORTHO05D007740 1.6e-07 59.7 35 71.4
Gorai.010G179000 Gossypium raimondii HOM05D005739 ORTHO05D007740 1.6e-07 59.7 35 71.4
PSO210G3635 Papaver somniferum HOM05D005739 ORTHO05D007740 1.6e-07 59.7 35 65.7
Sc06g0010750 Simmondsia chinensis HOM05D005739 ORTHO05D007740 1.6e-07 59.7 35 71.4
RcHm_v2.0_Chr5g0003721 Rosa chinensis HOM05D005739 ORTHO05D007740 2.1e-07 59.3 64 57.8
Aqoxy1G03635 Aquilegia oxysepala HOM05D005739 ORTHO05D007740 2.7e-07 58.9 35 71.4
EL10Ac8g20019 Beta vulgaris HOM05D005739 ORTHO05D007740 2.7e-07 58.9 35 80.0
Lj6g0027190 Lotus japonicus HOM05D005739 ORTHO05D007740 2.7e-07 58.9 48 64.6
CDE11G0579 Ceratophyllum demersum HOM05D005739 ORTHO05D007740 3.5e-07 58.5 34 73.5
ECA234G0122 Erigeron canadensis HOM05D005739 ORTHO05D007740 3.5e-07 58.5 35 74.3
FAN25G0806 Fragaria x ananassa HOM05D005739 ORTHO05D007740 4.6e-07 58.2 35 80.0
Ca_00625_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 6.0e-07 57.8 33 81.8
HPP92_016297 Vanilla planifolia HOM05D005739 ORTHO05D007740 6.0e-07 57.8 34 70.6
HPP92_016316 Vanilla planifolia HOM05D005739 ORTHO05D007740 6.0e-07 57.8 34 70.6
Lalb_Chr20g0118561 Lupinus albus HOM05D005739 ORTHO05D007740 1.0e-06 57.0 35 74.3
MD10G1317700 Malus domestica HOM05D005739 ORTHO05D007740 1.0e-06 57.0 35 77.1
TPR.G7643 Trifolium pratense HOM05D005739 ORTHO05D007740 1.0e-06 57.0 33 81.8
Psat1g181440 Pisum sativum HOM05D005739 ORTHO05D007740 1.3e-06 56.6 33 81.8
Medtr2g022780 Medicago truncatula HOM05D005739 ORTHO05D007740 1.7e-06 56.2 39 69.2
arahy.Tifrunner.gnm1.ann1.H0U1UD Arachis hypogaea HOM05D005739 ORTHO05D007740 3.9e-06 55.1 28 92.9
Cc09_g01940 Coffea canephora HOM05D005739 ORTHO05D007740 6.6e-06 54.3 29 82.8


User provided reference genes

Program Settings