Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2498.4 1278 100.0
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2441.4 1278 97.7
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2322.4 1277 93.4
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2295.4 1349 88.7
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 2099.7 1278 83.4
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2060.4 1262 82.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 2058.9 1279 81.7
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2048.9 1260 81.7
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 2022.7 1272 80.9
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 2020.0 1278 79.9
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 2014.6 1260 81.0
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1953.3 1333 75.9
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1933.3 1277 77.6
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1922.1 1273 76.4
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1788.9 1257 72.8
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1785.8 1257 72.2
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1784.2 1258 71.9
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1780.8 1258 71.9
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1780.0 1256 72.9
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1773.8 1271 71.4
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1773.1 1258 71.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1768.4 1268 71.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1762.3 1257 70.7
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1761.1 1283 70.2
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1758.8 1261 71.1
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1757.7 1283 70.0
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1756.9 1281 70.5
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1756.5 1283 70.1
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1746.5 1257 71.1
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1744.2 1264 70.1
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1740.7 1259 70.5
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1739.5 1289 69.2
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1724.1 1265 70.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1723.8 1276 69.7
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1713.0 1267 69.8
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1693.7 1325 67.2
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1686.4 1280 68.5
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1674.4 1281 66.8
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1673.3 1268 66.4
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1672.1 1259 68.0
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1671.8 1266 67.7
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1667.5 1275 66.7
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1666.7 1255 68.9
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1666.7 1261 67.0
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1666.4 1266 66.9
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1664.0 1257 66.5
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1663.3 1263 68.7
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1661.7 1296 66.3
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1657.9 1282 66.2
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1653.3 1258 67.3
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1649.4 1279 65.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1646.3 1258 66.7
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1637.1 1263 66.5
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1637.1 1283 65.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1261 65.6
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1632.1 1265 65.2
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1628.6 1260 65.2
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1627.1 1328 63.8
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1625.9 1257 66.7
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1622.8 1258 65.1
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1620.1 1260 66.6
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1620.1 1259 65.1
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1619.8 1189 70.9
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1619.0 1257 65.2
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1617.8 1258 66.5
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1615.5 1277 64.4
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1614.7 1258 66.2
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1612.0 1273 64.8
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1610.1 1256 65.8
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1605.9 1333 63.5
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1602.0 1257 65.9
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1598.6 1259 66.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1595.1 1274 65.4
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1592.8 1253 66.1
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1592.0 1248 66.7
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1589.3 1253 65.9
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1588.2 1274 65.1
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1575.5 1271 63.8
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1567.7 1188 67.7
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1552.3 1274 64.1
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1551.6 1260 64.7
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1530.0 1192 65.8
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1520.4 1268 62.9
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1516.1 1257 62.7
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1501.5 1321 60.9
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1496.1 1189 66.1
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1493.8 1213 64.7
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1444.9 1173 63.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1440.2 1256 60.0
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1439.9 1012 72.3
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1430.2 1026 70.7
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1427.2 1260 58.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1415.2 1292 57.7
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1403.7 1256 58.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1371.3 1260 57.1
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1270.0 1045 63.2
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1173.7 891 67.0
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1142.5 1269 51.5
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1134.0 1281 48.6
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1130.2 1251 48.5
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1098.2 891 64.2
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1089.3 975 58.4
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1078.2 965 61.3
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 7.3e-301 1037.7 797 66.0
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 2.2e-289 999.6 820 63.2
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 6.0e-287 991.5 1288 44.6
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.1e-280 970.7 656 74.8
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 3.4e-258 896.0 1221 42.8
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 1.2e-215 754.6 538 72.1
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.6e-215 754.2 1290 36.7
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 2.4e-187 660.6 626 56.9
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 3.0e-185 653.7 1418 34.1
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 5.4e-179 632.9 601 54.9
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 9.0e-174 615.5 468 67.3
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 9.6e-168 595.5 1274 32.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 8.4e-164 582.4 494 62.3
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 7.7e-149 532.7 647 48.7
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.6e-122 445.3 1173 30.9
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 4.7e-122 443.7 275 80.4
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 3.0e-121 441.0 710 41.5
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.5e-120 438.7 329 67.8
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 7.3e-99 366.7 232 80.2
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.6e-93 349.0 344 53.2
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.2e-90 339.3 237 74.3
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.5e-83 313.2 270 58.9
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.5e-83 313.2 270 58.9
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 9.2e-78 296.6 200 74.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.6e-76 290.4 237 61.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.1e-57 228.4 174 65.5
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 7.1e-54 217.2 175 64.0
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 8.1e-50 203.8 161 63.4
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.4e-49 203.0 161 64.0
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.8e-39 168.3 104 77.9
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 8.7e-36 157.1 119 67.2
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 4.1e-33 148.3 1185 22.7
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.2e-31 142.5 114 60.5
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 4.6e-29 134.8 226 39.4
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.2e-22 112.1 118 56.8
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 3.3e-19 102.1 162 40.1
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 5.7e-19 101.3 119 42.9
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 7.4e-19 100.9 92 54.3
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.7e-18 99.8 119 42.0
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.7e-18 98.6 160 36.2
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.4e-17 96.7 149 34.2
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.8e-17 96.3 91 58.2
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.7e-16 90.9 62 71.0
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 5.0e-15 88.2 125 39.2
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.0e-12 80.5 126 35.7
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.3e-12 79.3 79 49.4
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.5e-11 76.6 49 75.5
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 2.8e-10 72.4 120 43.3
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 3.5e-08 65.5 47 70.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 8.5e-07 60.8 156 36.5
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 1.1e-06 60.5 50 60.0
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 3.2e-06 58.9 59 45.8
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 7.2e-06 57.8 38 71.1
GSVIVG01029815001 Vitis vinifera HOM05D004478 ORTHO05D016211 9.4e-06 57.4 33 78.8


User provided reference genes

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