Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.3e-138 496.5 264 100.0
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.7e-127 459.5 251 98.8
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 1.1e-97 360.5 215 80.9
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 3.1e-97 359.0 218 79.4
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.0e-95 354.0 218 78.9
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 7.2e-94 347.8 218 78.9
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 5.2e-92 341.7 218 74.3
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 8.8e-92 340.9 217 76.5
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 5.5e-86 321.6 221 71.5
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 7.2e-86 321.2 220 73.2
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 1.0e-84 317.4 223 71.3
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 8.3e-82 307.8 219 69.9
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 2.0e-80 303.1 217 64.5
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 2.0e-80 303.1 215 69.3
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.3e-79 300.4 218 66.1
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.7e-79 300.1 218 67.0
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.7e-79 300.1 218 67.0
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 5.0e-79 298.5 219 69.4
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 8.6e-79 297.7 218 67.0
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.5e-78 297.0 215 67.0
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.9e-78 296.6 222 66.2
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 2.5e-78 296.2 221 69.2
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 4.3e-78 295.4 218 67.9
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 4.3e-78 295.4 222 66.2
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 3.6e-77 292.4 229 66.8
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 4.7e-77 292.0 253 59.7
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 8.0e-77 291.2 222 68.5
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 8.0e-77 291.2 258 59.7
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.4e-76 290.4 225 67.6
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.4e-76 290.4 226 62.4
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.4e-76 290.4 223 61.9
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 5.2e-76 288.5 223 68.2
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.2e-75 287.3 177 78.0
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 2.9e-74 282.7 223 63.7
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 1.1e-73 280.8 219 65.3
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.8e-73 280.0 223 66.4
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.9e-72 275.0 227 63.9
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 1.2e-69 267.3 178 71.9
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 2.8e-69 266.2 178 71.3
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 1.4e-68 263.8 220 62.7
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 8.9e-68 261.2 224 60.3
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.2e-67 260.8 228 61.0
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.2e-67 260.8 217 58.5
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.5e-67 260.4 226 61.1
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 3.2e-65 252.7 205 62.9
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 9.2e-65 251.1 220 60.5
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 9.2e-65 251.1 221 56.1
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.6e-64 250.4 221 62.4
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 7.8e-64 248.1 181 69.1
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 1.3e-63 247.3 219 59.4
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 2.3e-63 246.5 181 69.1
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 6.6e-63 245.0 219 58.4
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.1e-62 244.2 221 57.5
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 2.5e-62 243.0 219 58.0
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 5.6e-62 241.9 230 57.8
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 9.5e-62 241.1 208 59.6
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 1.2e-61 240.7 151 76.2
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 4.7e-61 238.8 221 57.9
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 4.7e-61 238.8 221 57.9
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 4.7e-61 238.8 221 57.9
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 4.0e-60 235.7 219 57.1
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 5.2e-60 235.3 220 56.4
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 8.9e-60 234.6 219 56.6
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 2.0e-59 233.4 219 56.2
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 2.0e-59 233.4 219 56.2
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 2.0e-59 233.4 219 56.2
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 3.2e-57 226.1 217 53.9
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 7.1e-57 224.9 238 49.2
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.1e-56 223.4 202 56.9
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 4.6e-56 222.2 202 56.9
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 4.6e-56 222.2 219 52.5
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.7e-55 220.3 245 47.3
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 6.6e-55 218.4 212 52.4
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.1e-54 217.6 149 69.8
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.2e-53 214.2 154 64.9
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 6.2e-53 211.8 170 64.7
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 1.8e-52 210.3 152 67.1
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 5.8e-51 205.3 219 49.8
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 7.6e-51 204.9 219 48.9
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 1.7e-50 203.8 237 48.5
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 7.1e-49 198.4 216 50.9
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 2.7e-48 196.4 218 50.5
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 2.5e-46 189.9 222 47.7
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 5.6e-46 188.7 127 66.9
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 5.6e-46 188.7 313 36.1
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 7.3e-46 188.3 176 51.7
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 5.2e-44 182.2 145 62.8
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 1.7e-42 177.2 219 46.1
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.2e-40 171.0 141 65.2
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.7e-40 169.9 141 65.2
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 7.8e-40 168.3 154 58.4
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 7.8e-40 168.3 258 38.4
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 7.8e-40 168.3 141 64.5
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 1.7e-39 167.2 153 59.5
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 3.9e-39 166.0 151 58.9
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 5.1e-39 165.6 160 59.4
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 3.3e-38 162.9 261 36.8
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 9.6e-38 161.4 138 55.8
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.3e-37 161.0 219 42.5
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 1.6e-37 160.6 144 59.0
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.1e-37 160.2 284 34.5
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.8e-37 159.8 221 40.3
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 4.8e-37 159.1 138 55.1
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 8.1e-37 158.3 140 59.3
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 2.4e-36 156.8 156 55.1
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 3.1e-36 156.4 142 60.6
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 5.3e-36 155.6 178 45.5
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 9.0e-36 154.8 221 38.0
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.3e-34 151.0 139 56.8
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 3.0e-31 139.8 151 53.0
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 3.9e-31 139.4 242 36.8
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.3e-29 134.4 149 49.0
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 2.6e-27 126.7 66 89.4
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 2.6e-27 126.7 146 44.5
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 7.6e-27 125.2 82 72.0
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 3.2e-25 119.8 147 45.6
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 8.7e-23 111.7 132 43.2
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 5.5e-09 65.9 78 39.7
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 2.7e-08 63.5 69 42.0
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 6.1e-08 62.4 74 37.8


User provided reference genes

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