Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.7e-288 995.3 510 100.0
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 5.7e-273 943.7 490 99.2
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 9.6e-220 766.9 481 83.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 3.8e-216 755.0 481 81.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 6.0e-214 747.7 481 79.4
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.0e-213 746.9 480 80.6
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.8e-213 746.1 480 80.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 7.4e-212 740.7 481 80.0
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.5e-209 733.0 480 77.3
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 1.2e-206 723.4 482 77.4
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.6e-201 705.7 482 75.5
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.4e-197 693.3 481 74.4
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.4e-194 683.3 481 74.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.3e-189 666.0 476 72.1
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.7e-188 661.4 480 71.5
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 7.4e-188 661.0 480 71.5
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.7e-187 659.8 481 72.1
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.4e-186 656.0 482 71.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 5.3e-186 654.8 480 69.8
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.6e-185 653.3 502 67.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.0e-184 650.6 476 72.5
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.0e-184 650.6 477 72.1
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.5e-183 646.7 477 70.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 9.4e-183 644.0 478 69.7
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.2e-182 643.7 477 71.9
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.2e-182 643.7 476 71.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.6e-182 642.1 480 69.8
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.0e-181 640.6 477 71.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 5.2e-181 638.3 481 69.9
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.3e-179 633.6 475 69.1
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.7e-179 633.3 481 67.6
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.1e-178 630.6 478 69.2
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.1e-178 630.6 419 76.4
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.4e-178 629.4 475 70.5
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.1e-178 628.6 478 69.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 5.3e-178 628.2 479 69.1
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 7.0e-178 627.9 479 69.3
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.2e-177 627.1 479 68.7
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.6e-177 626.7 493 66.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.7e-177 625.9 476 69.5
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 5.9e-177 624.8 477 67.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 8.5e-176 620.9 476 68.7
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.5e-175 620.2 477 68.3
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.9e-175 619.8 478 67.8
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-175 619.4 477 68.8
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 5.5e-175 618.2 477 69.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 9.4e-175 617.5 478 68.0
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.2e-174 617.1 467 69.2
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.2e-174 617.1 476 68.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-174 616.7 477 68.3
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.1e-174 616.3 478 67.8
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.6e-174 615.5 427 74.0
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 4.7e-174 615.1 477 68.1
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.4e-173 613.6 488 66.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-173 612.5 489 66.9
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.0e-173 612.1 488 66.0
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.2e-173 611.7 488 66.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 5.2e-173 611.7 495 65.7
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 6.8e-173 611.3 489 66.9
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 8.8e-173 610.9 489 66.7
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 8.8e-173 610.9 489 66.7
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.5e-172 610.1 478 68.0
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.6e-172 609.4 480 66.9
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.6e-172 609.4 489 65.6
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.4e-172 608.6 477 66.7
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 5.7e-172 608.2 489 66.3
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 9.8e-172 607.4 477 67.3
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-171 606.7 489 66.5
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 4.8e-171 605.1 485 66.0
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 8.3e-171 604.4 470 65.1
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.1e-170 604.0 466 66.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.4e-170 603.6 486 65.8
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 3.1e-170 602.4 485 65.4
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.2e-169 600.5 466 65.9
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.0e-169 599.7 484 63.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.5e-169 599.0 489 65.2
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 5.9e-169 598.2 478 64.9
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 5.9e-169 598.2 447 69.4
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.3e-168 597.0 484 64.3
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.3e-168 597.0 484 64.3
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.7e-168 596.7 480 66.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.8e-168 595.5 508 63.4
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 8.6e-168 594.3 478 65.7
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-167 592.8 478 65.5
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.5e-167 592.8 478 65.5
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.8e-166 589.3 517 62.1
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 2.8e-166 589.3 501 63.1
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 4.7e-166 588.6 480 65.4
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.4e-165 587.0 476 65.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.0e-165 585.9 468 64.3
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 5.2e-165 585.1 479 65.1
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-164 583.9 505 62.2
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.7e-163 580.1 473 65.5
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 8.3e-163 577.8 477 61.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.0e-161 573.2 446 69.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 2.3e-160 569.7 476 62.8
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.9e-160 569.3 440 69.5
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 8.6e-160 567.8 499 62.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.3e-159 565.5 466 63.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.0e-157 560.8 498 61.8
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.5e-156 557.0 576 53.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 3.4e-156 555.8 471 62.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.2e-155 553.1 486 59.9
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.4e-154 550.4 470 62.3
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 9.2e-154 547.7 475 61.5
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 4.6e-153 545.4 425 64.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.7e-150 535.4 422 64.9
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 8.9e-149 531.2 500 58.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 9.2e-146 521.2 509 56.4
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.6e-142 510.4 472 56.4
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.1e-141 507.7 471 56.9
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.4e-140 502.7 432 60.9
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.5e-135 486.5 411 61.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.1e-134 481.5 377 69.0
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 5.8e-132 475.3 474 54.4
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.7e-129 466.5 478 53.3
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 6.0e-129 465.3 474 52.1
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 2.5e-127 459.9 475 53.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 4.0e-125 452.6 492 53.5
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.2e-125 452.2 451 59.2
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 6.9e-125 451.8 314 73.9
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.9e-123 446.4 485 49.7
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 7.1e-122 441.8 472 50.4
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 5.1e-120 435.6 483 48.7
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.5e-119 433.3 483 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.3e-118 431.0 455 50.3
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 4.0e-117 426.0 417 54.2
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-116 424.1 475 48.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.4e-109 400.2 345 65.8
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.4e-99 365.2 474 44.7
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.7e-97 360.1 286 66.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.4e-93 347.1 318 61.0
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.4e-92 343.2 280 62.9
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.2e-91 340.5 419 47.3
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.0e-80 305.1 482 39.4
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.5e-71 274.6 177 73.4
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 5.9e-68 262.7 338 48.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.1e-65 254.2 475 37.3
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.0e-56 223.4 129 79.8
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 7.5e-55 219.2 173 66.5
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.8e-51 206.8 186 60.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.7e-49 199.9 152 65.1
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.4e-45 188.3 194 52.6
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.8e-45 188.0 168 60.7
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.0e-35 155.6 149 58.4
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.0e-32 143.7 94 75.5
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 8.3e-30 136.0 118 61.9
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.4e-29 134.4 132 57.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 4.3e-26 123.6 71 76.1
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 6.2e-25 119.8 118 56.8
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.9e-19 100.5 99 49.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.5e-18 98.6 61 83.6
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.9e-18 98.2 72 68.1
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.1e-16 90.9 58 75.9
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.4e-13 81.3 63 63.5
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 7.8e-12 76.3 46 78.3
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.0e-08 63.9 42 71.4
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 3.4e-07 60.8 37 81.1


User provided reference genes

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