Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1564.7 771 100.0
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1556.6 771 99.5
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1398.6 771 86.3
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 0.0e+00 1393.3 771 86.4
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1387.1 771 86.0
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 0.0e+00 1385.2 771 87.3
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 0.0e+00 1367.4 771 84.7
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 0.0e+00 1338.6 771 83.7
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 0.0e+00 1333.5 755 84.8
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 0.0e+00 1322.8 802 80.5
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 0.0e+00 1300.8 772 82.1
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 0.0e+00 1296.2 774 78.4
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1282.7 769 79.5
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1279.6 772 78.0
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1276.9 770 77.3
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1276.5 769 77.9
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 0.0e+00 1269.6 769 77.4
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1265.4 755 78.1
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1261.9 770 77.0
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 0.0e+00 1260.0 770 76.8
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1260.0 770 76.8
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1251.5 770 76.6
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1250.0 770 76.1
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1247.6 769 76.2
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1245.7 770 76.6
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 0.0e+00 1245.3 770 76.8
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1241.9 770 75.7
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 0.0e+00 1241.1 774 75.6
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1240.7 770 75.3
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1237.6 769 75.7
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 0.0e+00 1237.2 770 76.8
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1236.9 770 75.3
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1236.5 770 75.3
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1235.7 772 75.3
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1233.4 769 74.9
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 0.0e+00 1223.8 771 74.4
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1218.0 769 73.7
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1215.7 755 77.2
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1215.3 769 74.1
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1214.5 770 74.0
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 0.0e+00 1208.4 755 74.3
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 0.0e+00 1201.0 769 75.2
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 0.0e+00 1198.3 756 73.7
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1192.9 770 73.8
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1192.9 770 73.8
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 0.0e+00 1192.6 771 74.2
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 0.0e+00 1188.7 770 74.5
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1188.7 772 73.4
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1187.9 770 73.6
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 0.0e+00 1185.6 770 72.6
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 0.0e+00 1185.2 768 72.1
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 0.0e+00 1182.9 769 72.2
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 0.0e+00 1176.8 769 71.5
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 0.0e+00 1176.4 770 71.8
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 0.0e+00 1175.6 770 71.8
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1174.5 770 72.9
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1173.3 755 72.3
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1172.9 755 72.6
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 0.0e+00 1172.5 755 72.5
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 0.0e+00 1171.8 770 71.6
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 0.0e+00 1170.2 787 70.1
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 0.0e+00 1167.9 769 72.0
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 0.0e+00 1162.9 769 72.2
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 0.0e+00 1162.9 756 72.5
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1158.3 774 70.8
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1156.7 768 72.1
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1154.4 694 77.8
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1151.7 770 71.9
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1149.4 755 74.6
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1147.5 773 70.2
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 0.0e+00 1146.3 755 69.9
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1143.6 771 71.9
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1142.5 596 89.9
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 0.0e+00 1138.6 781 69.8
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 0.0e+00 1137.9 792 68.7
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1134.0 755 71.0
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 0.0e+00 1132.9 769 69.3
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 0.0e+00 1132.1 810 66.7
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1130.5 796 68.3
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 0.0e+00 1125.9 769 70.7
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 0.0e+00 1125.2 743 69.9
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1124.8 705 74.9
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1117.8 772 69.3
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 0.0e+00 1117.1 658 79.0
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1116.7 772 68.9
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1099.0 769 67.9
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 0.0e+00 1090.5 758 69.0
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 0.0e+00 1080.9 759 67.3
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 0.0e+00 1078.2 749 68.8
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 0.0e+00 1077.4 773 67.0
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 1.1e-311 1072.8 752 68.4
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 1.1e-311 1072.8 752 68.4
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 2.6e-311 1071.6 758 67.3
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 6.3e-311 1070.5 770 66.1
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 7.9e-311 1070.1 749 68.5
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 1.4e-310 1069.3 752 68.2
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 1.8e-310 1068.9 752 68.1
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 2.3e-310 1068.5 749 68.1
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 5.2e-310 1067.4 771 65.6
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 7.5e-309 1063.5 746 68.5
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 1.4e-307 1059.3 751 67.6
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 1.4e-307 1059.3 746 68.4
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 2.4e-307 1058.5 743 69.0
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 8.1e-303 1043.5 786 63.4
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 6.0e-298 1027.3 596 79.0
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 8.6e-297 1023.5 758 62.8
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 9.5e-296 1020.0 754 63.1
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 5.2e-294 1014.2 744 66.3
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 9.9e-293 1010.0 759 63.1
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 2.2e-292 1008.8 761 63.6
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 5.4e-291 1004.2 629 74.1
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 8.6e-289 996.9 778 63.1
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 1.6e-279 966.1 763 60.8
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 3.4e-277 958.4 763 60.4
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 9.0e-270 933.7 552 77.4
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.7e-268 929.5 713 64.2
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 4.3e-264 914.8 597 68.8
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.6e-261 905.6 546 76.4
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.2e-239 832.8 557 67.1
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 5.3e-238 828.2 572 68.9
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 2.2e-236 822.8 568 65.3
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.2e-224 783.9 561 66.5
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.2e-216 757.3 553 64.4
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 1.2e-210 737.3 602 56.8
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 4.0e-201 705.7 791 46.6
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.1e-198 697.6 608 55.4
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 4.8e-146 522.7 781 40.3
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 7.2e-118 429.1 382 54.5
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.2e-75 288.9 187 73.8
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 1.5e-67 261.9 264 53.8
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 9.2e-65 252.7 223 59.2
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 4.3e-46 190.7 284 45.1
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 2.1e-45 188.3 661 24.7
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 2.7e-40 171.4 642 23.5
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 6.7e-31 140.2 266 36.1
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 7.1e-25 120.2 117 53.0
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 3.7e-21 107.8 105 55.2
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 8.2e-21 106.7 216 38.0
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 2.0e-19 102.1 52 84.6
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 7.7e-19 100.1 57 82.5
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 1.3e-18 99.4 57 82.5
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 2.9e-18 98.2 65 73.8
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 3.2e-17 94.7 46 91.3
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 3.2e-17 94.7 46 91.3
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.0e-15 89.7 113 46.0
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 1.4e-12 79.3 131 40.5
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 1.5e-11 75.9 230 26.1
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 5.9e-11 73.9 337 22.8
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 2.2e-10 72.0 34 91.2
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 2.9e-10 71.6 256 24.6
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 3.8e-10 71.2 259 21.2
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 5.0e-10 70.9 40 75.0
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 1.1e-09 69.7 297 22.9
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 2.5e-09 68.6 215 28.8
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 7.2e-09 67.0 224 22.8
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 1.2e-08 66.2 255 23.5
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 2.1e-08 65.5 311 24.4
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 1.0e-07 63.2 269 23.8
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 2.3e-07 62.0 275 23.6
unitig_748.g8538 Utricularia gibba HOM05D005085 ORTHO05D006135 3.0e-07 61.6 43 62.8
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 6.7e-07 60.5 218 22.9
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 8.8e-07 60.1 214 23.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.1e-06 59.7 282 22.3
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.5e-06 59.3 201 26.9
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 2.0e-06 58.9 264 23.1
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 2.0e-06 58.9 255 21.6
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 3.3e-06 58.2 279 22.6
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 4.4e-06 57.8 217 22.1
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 5.7e-06 57.4 201 26.4
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 5.7e-06 57.4 263 23.2
Eucgr.F00025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 5.7e-06 57.4 320 23.1
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 9.7e-06 56.6 251 22.3
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 9.7e-06 56.6 263 22.4


User provided reference genes

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