Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 3.2e-46 188.0 88 100.0
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 1.1e-35 152.9 80 93.8
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 1.1e-35 152.9 80 93.8
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 2.5e-35 151.8 80 92.5
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 4.8e-34 147.5 80 90.0
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 1.4e-33 146.0 80 88.8
arahy.Tifrunner.gnm1.ann1.F0QMSU Arachis hypogaea HOM05D000651 ORTHO05D003990 9.0e-33 143.3 75 90.7
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 1.1e-30 136.3 77 87.0
arahy.Tifrunner.gnm1.ann1.UQR3KX Arachis hypogaea HOM05D000651 ORTHO05D003990 1.4e-25 119.4 65 86.2
arahy.Tifrunner.gnm1.ann1.UZQ5G1 Arachis hypogaea HOM05D000651 ORTHO05D003990 3.2e-22 108.2 55 92.7
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 2.2e-18 95.5 74 60.8
arahy.Tifrunner.gnm1.ann1.YH1KLB Arachis hypogaea HOM05D000651 ORTHO05D003990 8.2e-18 93.6 85 58.8
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 8.2e-18 93.6 77 57.1
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.1e-17 93.2 77 58.4
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 4.1e-17 91.3 80 55.0
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 5.3e-17 90.9 69 59.4
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 2.0e-16 89.0 79 53.2
arahy.Tifrunner.gnm1.ann1.FQ9DWZ Arachis hypogaea HOM05D000651 ORTHO05D003990 1.9e-14 82.4 43 93.0
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 1.2e-13 79.7 65 58.5
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 6.1e-13 77.4 62 59.7
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 1.0e-12 76.6 68 61.8
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.4e-12 76.3 63 58.7
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 1.4e-12 76.3 73 52.1
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.8e-12 75.9 63 58.7
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 1.8e-12 75.9 67 53.7
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 5.1e-12 74.3 73 49.3
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 5.1e-12 74.3 62 56.5
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 6.7e-12 73.9 78 47.4
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 6.7e-12 73.9 76 51.3
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 6.7e-12 73.9 75 46.7
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 8.8e-12 73.6 61 57.4
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 1.1e-11 73.2 77 49.4
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 1.1e-11 73.2 74 50.0
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 1.1e-11 73.2 71 50.7
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 1.5e-11 72.8 62 53.2
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 2.0e-11 72.4 68 55.9
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 3.3e-11 71.6 74 50.0
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 4.3e-11 71.2 67 52.2
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 5.7e-11 70.9 66 57.6
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 5.7e-11 70.9 66 57.6
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 5.7e-11 70.9 76 50.0
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 5.7e-11 70.9 76 47.4
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 5.7e-11 70.9 74 48.6
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 5.7e-11 70.9 74 48.6
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 5.7e-11 70.9 62 54.8
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 7.4e-11 70.5 97 39.2
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 9.7e-11 70.1 62 56.5
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 9.7e-11 70.1 65 47.7
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 9.7e-11 70.1 67 49.3
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 9.7e-11 70.1 62 54.8
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 1.3e-10 69.7 62 51.6
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 1.3e-10 69.7 62 51.6
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.7e-10 69.3 66 56.1
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 1.7e-10 69.3 63 52.4
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 2.2e-10 68.9 72 52.8
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.2e-10 68.9 76 48.7
Sed0005667 Sechium edule HOM05D021888 ORTHO05D003990 2.2e-10 68.9 76 43.4
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 2.8e-10 68.6 75 48.0
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 2.8e-10 68.6 76 44.7
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.7e-10 68.2 66 56.1
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 3.7e-10 68.2 57 63.2
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 4.8e-10 67.8 76 46.1
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 8.2e-10 67.0 62 54.8
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 8.2e-10 67.0 79 43.0
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 8.2e-10 67.0 67 50.7
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 1.1e-09 66.6 72 52.8
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 1.1e-09 66.6 72 52.8
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.1e-09 66.6 78 43.6
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 1.1e-09 66.6 62 54.8
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 1.4e-09 66.2 67 47.8
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 1.8e-09 65.9 74 47.3
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 2.4e-09 65.5 62 51.6
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 2.4e-09 65.5 76 43.4
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 2.4e-09 65.5 79 41.8
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 2.4e-09 65.5 65 47.7
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.1e-09 65.1 62 51.6
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.1e-09 65.1 62 51.6
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 3.1e-09 65.1 65 52.3
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.1e-09 65.1 65 47.7
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 3.1e-09 65.1 67 47.8
arahy.Tifrunner.gnm1.ann1.9L0M57 Arachis hypogaea HOM05D000651 ORTHO05D003990 4.1e-09 64.7 42 78.6
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.1e-09 64.7 64 45.3
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 4.1e-09 64.7 62 51.6
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 5.3e-09 64.3 70 50.0
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 5.3e-09 64.3 62 53.2
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 5.3e-09 64.3 78 43.6
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 6.9e-09 63.9 62 54.8
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 6.9e-09 63.9 65 50.8
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 6.9e-09 63.9 65 49.2
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 6.9e-09 63.9 66 50.0
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 6.9e-09 63.9 62 51.6
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 6.9e-09 63.9 82 46.3
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 9.1e-09 63.5 79 45.6
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 9.1e-09 63.5 65 47.7
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 9.1e-09 63.5 62 50.0
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.2e-08 63.2 62 53.2
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 1.5e-08 62.8 62 51.6
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 1.5e-08 62.8 62 51.6
Prupe.1G325800 Prunus persica HOM05D021888 ORTHO05D003990 1.5e-08 62.8 71 50.7
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 2.6e-08 62.0 57 54.4
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.6e-08 62.0 66 48.5
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 2.6e-08 62.0 74 45.9
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 3.4e-08 61.6 54 53.7
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 3.4e-08 61.6 64 43.8
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 3.4e-08 61.6 62 48.4
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 3.4e-08 61.6 68 52.9
TPR.G32483 Trifolium pratense HOM05D000651 ORTHO05D003990 3.4e-08 61.6 63 54.0
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 3.4e-08 61.6 68 52.9
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 4.5e-08 61.2 53 56.6
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 5.9e-08 60.8 83 44.6
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 5.9e-08 60.8 54 53.7
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 7.7e-08 60.5 65 49.2
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 7.7e-08 60.5 62 50.0
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 1.0e-07 60.1 73 39.7
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 1.0e-07 60.1 62 48.4
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 1.3e-07 59.7 76 43.4
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 1.3e-07 59.7 76 43.4
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.3e-07 59.7 68 45.6
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.7e-07 59.3 65 50.8
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 1.7e-07 59.3 63 52.4
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 2.2e-07 58.9 81 42.0
Cpa.g.sc37.24 Carica papaya HOM05D008822 ORTHO05D003990 2.2e-07 58.9 53 58.5
Cpa.g.sc37.25 Carica papaya HOM05D008822 ORTHO05D003990 2.2e-07 58.9 53 58.5
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 3.8e-07 58.2 62 46.8
DCAR_015823 Daucus carota HOM05D008822 ORTHO05D003990 3.8e-07 58.2 62 46.8
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 5.0e-07 57.8 68 42.6
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 5.0e-07 57.8 65 46.2
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 5.0e-07 57.8 73 39.7
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 6.5e-07 57.4 70 50.0
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 8.5e-07 57.0 55 52.7
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 1.1e-06 56.6 52 53.8
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 1.1e-06 56.6 69 42.0
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 1.1e-06 56.6 55 52.7
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 1.1e-06 56.6 55 52.7
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.1e-06 56.6 64 51.6
Atru.chr12.1001 Acer truncatum HOM05D008822 ORTHO05D003990 1.4e-06 56.2 65 46.2
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 1.4e-06 56.2 62 46.8
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 1.9e-06 55.8 64 43.8
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.5e-06 55.5 65 44.6
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.5e-06 55.5 65 44.6
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 3.2e-06 55.1 62 46.8
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 4.2e-06 54.7 61 47.5
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 5.5e-06 54.3 55 49.1
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 5.5e-06 54.3 65 43.1
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 5.5e-06 54.3 60 50.0
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 7.2e-06 53.9 55 47.3
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 7.2e-06 53.9 52 48.1
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 7.2e-06 53.9 52 51.9
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 9.4e-06 53.5 61 44.3


User provided reference genes

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