Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 2.8e-31 137.9 66 100.0
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 2.8e-31 137.9 66 100.0
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 1.0e-25 119.4 64 85.9
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 1.0e-25 119.4 64 85.9
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 6.8e-25 116.7 66 81.8
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 8.8e-25 116.3 65 83.1
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 1.2e-24 115.9 65 83.1
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 2.6e-24 114.8 64 81.2
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.4e-24 114.4 65 81.5
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.4e-24 114.4 65 81.5
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 3.4e-24 114.4 65 83.1
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 5.7e-24 113.6 62 85.5
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 5.7e-24 113.6 62 85.5
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 7.5e-24 113.2 65 80.0
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 7.5e-24 113.2 65 80.0
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 7.5e-24 113.2 64 79.7
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 7.5e-24 113.2 66 80.3
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 9.8e-24 112.8 65 80.0
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 1.3e-23 112.5 65 78.5
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 1.7e-23 112.1 61 82.0
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 1.7e-23 112.1 65 80.0
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 2.2e-23 111.7 62 82.3
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 2.2e-23 111.7 62 82.3
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 76.9
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 2.2e-23 111.7 65 76.9
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 3.7e-23 110.9 64 79.7
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 4.8e-23 110.5 65 75.4
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 4.8e-23 110.5 64 81.2
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 6.3e-23 110.2 64 79.7
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 1.1e-22 109.4 66 77.3
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 1.4e-22 109.0 63 79.4
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 1.4e-22 109.0 66 77.3
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 1.8e-22 108.6 61 82.0
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 2.4e-22 108.2 64 78.1
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 3.1e-22 107.8 62 80.6
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 3.1e-22 107.8 66 77.3
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 3.1e-22 107.8 64 78.1
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 3.1e-22 107.8 62 82.3
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 4.1e-22 107.5 61 80.3
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 4.1e-22 107.5 63 79.4
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 5.4e-22 107.1 64 78.1
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 5.4e-22 107.1 61 78.7
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 7.0e-22 106.7 61 80.3
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 7.0e-22 106.7 59 79.7
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 9.1e-22 106.3 66 75.8
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 1.2e-21 105.9 62 80.6
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 1.6e-21 105.5 60 76.7
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 2.7e-21 104.8 66 74.2
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.7e-21 104.8 59 81.4
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.7e-21 104.8 59 81.4
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.7e-21 104.8 59 81.4
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 2.7e-21 104.8 59 81.4
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 2.7e-21 104.8 59 81.4
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 2.7e-21 104.8 59 81.4
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 3.5e-21 104.4 66 74.2
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 3.5e-21 104.4 65 73.8
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 3.5e-21 104.4 61 80.3
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 5.9e-21 103.6 65 73.8
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 5.9e-21 103.6 66 74.2
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 5.9e-21 103.6 66 74.2
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 7.7e-21 103.2 66 72.7
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 7.7e-21 103.2 64 73.4
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 7.7e-21 103.2 63 73.0
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.0e-20 102.8 65 75.4
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.0e-20 102.8 65 75.4
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 1.3e-20 102.4 66 72.7
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 1.3e-20 102.4 66 72.7
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 1.3e-20 102.4 66 72.7
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 1.3e-20 102.4 66 72.7
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 1.7e-20 102.1 56 80.4
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 2.9e-20 101.3 66 71.2
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 2.9e-20 101.3 66 71.2
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 2.9e-20 101.3 66 71.2
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 2.9e-20 101.3 64 71.9
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 3.8e-20 100.9 66 71.2
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 5.0e-20 100.5 63 73.0
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 5.0e-20 100.5 62 74.2
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 5.0e-20 100.5 62 74.2
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 6.6e-20 100.1 62 74.2
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 1.1e-19 99.4 66 68.2
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 1.5e-19 99.0 62 72.6
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 1.9e-19 98.6 61 73.8
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 2.5e-19 98.2 62 72.6
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 3.3e-19 97.8 61 75.4
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 7.2e-19 96.7 57 77.2
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 1.2e-18 95.9 52 84.6
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 1.6e-18 95.5 62 72.6
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 4.7e-18 94.0 55 78.2
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 1.0e-17 92.8 65 63.1
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 3.4e-16 87.8 63 65.1
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 5.4e-14 80.5 58 69.0
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 2.0e-13 78.6 55 69.1
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 1.0e-12 76.3 47 72.3
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 1.3e-12 75.9 59 64.4
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 4.3e-11 70.9 48 68.8
CBR_g5630 Chara braunii HOM05D007303 ORTHO05D009231 1.2e-10 69.3 55 54.5
Mapoly0148s0030 Marchantia polymorpha HOM05D007303 ORTHO05D009231 8.0e-10 66.6 62 48.4
Pp3c10_5690 Physcomitrium patens HOM05D007303 ORTHO05D009231 3.1e-09 64.7 60 48.3
Pp3c10_5720 Physcomitrium patens HOM05D007303 ORTHO05D009231 3.1e-09 64.7 60 48.3
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 6.8e-09 63.5 38 73.7
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 1.5e-08 62.4 36 77.8
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 2.0e-08 62.0 36 77.8
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 4.4e-08 60.8 36 75.0
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 4.4e-08 60.8 36 75.0
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 7.5e-08 60.1 38 68.4
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 6.4e-07 57.0 36 72.2


User provided reference genes

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