Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 3.5e-172 608.2 314 100.0
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 3.8e-110 402.1 214 92.5
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 6.0e-87 325.1 200 80.5
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.4e-83 313.9 199 78.4
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 4.0e-83 312.4 198 75.3
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 6.8e-83 311.6 198 76.3
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 6.8e-83 311.6 198 75.8
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 4.9e-81 305.4 198 75.3
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 4.1e-80 302.4 198 73.7
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 2.1e-79 300.1 198 72.2
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 3.5e-79 299.3 198 72.7
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 5.6e-77 292.0 199 74.9
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 1.2e-74 284.3 200 71.0
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 5.8e-74 282.0 200 69.0
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 1.1e-72 277.7 200 68.5
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.1e-72 277.7 198 68.2
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 2.7e-71 273.1 200 68.0
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 3.5e-71 272.7 201 66.7
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 4.6e-71 272.3 199 68.3
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 3.9e-70 269.2 199 68.3
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 9.6e-69 264.6 199 64.3
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 9.6e-69 264.6 201 65.2
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.8e-68 263.1 197 67.0
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 8.1e-68 261.5 195 65.1
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.1e-67 261.2 200 65.0
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.1e-67 261.2 198 63.1
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.4e-67 260.8 271 53.5
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 2.4e-67 260.0 200 64.0
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.1e-67 259.6 197 62.9
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 3.1e-67 259.6 199 64.8
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 4.0e-67 259.2 197 63.5
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 4.0e-67 259.2 196 64.8
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 5.2e-67 258.8 205 60.5
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 6.8e-67 258.5 197 61.9
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 6.8e-67 258.5 197 64.5
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.2e-66 257.7 194 64.9
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.5e-66 257.3 197 61.4
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 1.5e-66 257.3 205 60.5
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 2.6e-66 256.5 202 61.9
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.4e-66 256.1 217 59.4
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 4.4e-66 255.8 192 66.1
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 5.8e-66 255.4 192 65.1
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.8e-66 255.4 197 64.0
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 7.6e-66 255.0 214 62.1
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 9.9e-66 254.6 206 62.1
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.3e-65 254.2 197 62.9
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.7e-65 253.8 192 65.1
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.7e-65 253.8 192 65.1
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.7e-65 253.8 194 65.5
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 2.9e-65 253.1 199 61.8
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 8.4e-65 251.5 197 62.4
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.9e-64 250.4 198 62.1
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 3.2e-64 249.6 197 61.9
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 4.2e-64 249.2 197 60.9
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 5.4e-64 248.8 197 62.9
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 1.6e-63 247.3 199 62.8
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 4.6e-63 245.7 198 63.6
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 4.6e-63 245.7 187 65.2
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.0e-62 244.6 197 61.4
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.0e-62 244.6 195 60.5
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.5e-61 240.0 197 61.4
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 3.3e-61 239.6 195 59.5
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 3.3e-61 239.6 200 60.5
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 6.2e-60 235.3 207 56.0
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 8.1e-60 235.0 197 59.4
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.8e-59 233.8 193 60.6
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.8e-59 233.8 199 56.3
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 3.1e-59 233.0 198 57.6
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 3.1e-59 233.0 228 53.5
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 5.3e-59 232.3 197 56.9
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 5.3e-59 232.3 193 60.1
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.2e-58 231.1 121 81.8
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.5e-58 230.7 227 53.3
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.6e-58 229.9 197 60.4
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 5.8e-58 228.8 128 78.9
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 9.9e-58 228.0 168 66.7
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.3e-57 227.6 136 73.5
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 6.4e-57 225.3 194 54.1
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 1.1e-56 224.6 196 58.2
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.1e-56 224.6 129 76.0
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.1e-56 224.6 129 75.2
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.4e-56 223.4 195 54.9
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 4.2e-56 222.6 195 54.9
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 7.1e-56 221.9 206 57.3
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 7.1e-56 221.9 193 54.9
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 4.6e-55 219.2 191 55.5
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 7.9e-55 218.4 254 48.0
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 7.9e-55 218.4 122 75.4
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 1.3e-54 217.6 177 64.4
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 3.0e-54 216.5 119 78.2
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.6e-54 215.3 197 57.9
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 4.3e-53 212.6 168 63.7
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 2.1e-52 210.3 208 55.3
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 3.6e-52 209.5 151 61.6
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.1e-51 206.5 116 74.1
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 9.0e-51 204.9 177 55.9
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 4.2e-48 196.1 162 60.5
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.2e-47 194.5 137 68.6
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 2.7e-47 193.4 162 63.0
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.7e-47 193.4 121 70.2
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 2.3e-46 190.3 114 71.1
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 3.0e-46 189.9 224 44.6
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 3.9e-46 189.5 124 66.1
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 9.6e-45 184.9 253 44.3
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 3.1e-43 179.9 94 80.9
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 4.5e-42 176.0 123 56.9
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.5e-40 169.1 198 43.9
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 7.1e-40 168.7 178 45.5
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 2.7e-39 166.8 181 51.4
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 6.0e-39 165.6 128 61.7
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.5e-37 160.2 136 52.9
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 2.1e-36 157.1 137 59.9
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 6.9e-35 152.1 125 65.6
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.0e-34 150.6 204 45.1
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.9e-33 146.7 125 51.2
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 6.5e-33 145.6 137 56.9
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 5.1e-30 136.0 137 44.5
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 8.7e-30 135.2 63 92.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 4.3e-29 132.9 266 33.5
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.4e-27 127.9 163 45.4
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 5.3e-27 125.9 100 48.0
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 5.3e-27 125.9 142 46.5
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 9.0e-27 125.2 97 58.8
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 3.4e-26 123.2 96 55.2
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 2.9e-25 120.2 117 46.2
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.5e-24 117.1 100 48.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.2e-24 115.5 58 84.5
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 7.9e-23 112.1 58 79.3
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 1.0e-22 111.7 99 61.6
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 2.4e-19 100.5 116 46.6
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 2.6e-18 97.1 104 45.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 7.7e-18 95.5 93 41.9
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 1.7e-12 77.8 118 38.1
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 2.8e-12 77.0 41 85.4
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 4.8e-12 76.3 119 39.5
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 2.4e-11 73.9 42 66.7
arahy.Tifrunner.gnm1.ann1.XBI9DP Arachis hypogaea HOM05D014715 ORTHO05D016643 1.0e-09 68.6 70 58.6
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 3.8e-09 66.6 124 40.3
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 5.0e-09 66.2 35 74.3
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 5.0e-09 66.2 35 74.3
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 6.5e-09 65.9 42 61.9


User provided reference genes

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