Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 4.5e-236 820.8 413 100.0
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.5e-231 805.8 413 97.8
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 5.6e-218 760.8 413 93.0
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 6.5e-150 534.6 419 67.5
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 5.3e-144 515.0 418 64.1
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.6e-143 513.5 388 68.3
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 7.7e-143 511.1 420 64.8
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 2.7e-135 486.1 418 61.2
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 1.7e-134 483.4 418 60.8
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 8.3e-129 464.5 422 60.9
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 9.2e-128 461.1 417 59.2
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.6e-124 450.3 428 56.8
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 7.5e-122 441.4 425 56.9
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 9.8e-122 441.0 429 55.2
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 3.9e-118 429.1 426 54.7
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 4.3e-117 425.6 413 56.9
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 7.3e-117 424.9 426 54.7
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.8e-115 420.2 427 53.9
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.9e-113 412.9 422 52.8
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 4.9e-113 412.1 427 53.6
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.1e-109 401.0 422 52.1
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 1.5e-109 400.6 426 52.1
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 3.1e-107 392.9 412 54.1
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 4.0e-107 392.5 422 50.7
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 5.2e-107 392.1 444 50.0
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 6.4e-105 385.2 426 50.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.4e-104 384.0 424 51.2
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 6.0e-103 378.6 419 49.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 3.0e-102 376.3 423 50.6
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.1e-101 374.4 428 49.3
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 9.5e-101 371.3 432 47.7
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 2.3e-99 366.7 375 54.1
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.2e-98 364.4 427 48.2
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 2.0e-98 363.6 427 47.1
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.0e-98 363.6 425 47.3
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 7.6e-98 361.7 412 49.8
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.7e-97 360.5 420 48.8
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 3.7e-97 359.4 433 48.3
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 4.9e-97 359.0 421 46.3
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.4e-96 357.5 426 45.8
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.4e-96 356.7 424 46.2
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 4.1e-96 355.9 390 50.0
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 5.4e-96 355.5 419 47.0
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.2e-95 354.4 428 47.0
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.6e-95 354.0 426 46.0
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.6e-95 354.0 423 45.6
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 3.5e-95 352.8 424 46.9
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 7.8e-95 351.7 439 47.4
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 3.9e-94 349.4 438 47.9
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 6.6e-94 348.6 397 48.4
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.6e-93 344.7 420 46.2
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.2e-92 344.4 375 49.1
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 1.2e-92 344.4 421 44.7
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.2e-92 344.4 426 45.5
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.2e-92 344.4 421 48.5
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 3.6e-92 342.8 419 47.7
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 6.2e-92 342.0 425 44.0
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 8.1e-92 341.7 421 48.5
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.4e-91 340.9 422 46.2
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.4e-91 340.9 422 46.0
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 1.8e-91 340.5 392 50.8
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 2.4e-91 340.1 420 45.7
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 4.0e-91 339.3 463 42.3
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 6.8e-91 338.6 425 46.8
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 1.2e-90 337.8 422 44.1
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.5e-90 337.4 417 44.8
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 2.6e-90 336.7 423 46.8
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.6e-90 335.1 420 45.2
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 9.9e-90 334.7 425 43.5
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 2.9e-89 333.2 392 49.0
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.8e-89 332.8 416 46.9
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.9e-89 332.4 420 47.1
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 9.3e-88 328.2 420 46.4
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.2e-87 327.8 426 44.4
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 4.6e-87 325.9 425 42.8
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.0e-87 325.5 399 48.1
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.7e-86 323.9 397 48.1
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.3e-86 323.6 397 48.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.0e-86 323.2 416 45.0
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 8.7e-86 321.6 425 45.4
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 8.7e-86 321.6 370 48.4
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 3.3e-85 319.7 418 45.7
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 4.3e-85 319.3 419 43.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.3e-85 319.3 397 47.4
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 7.3e-85 318.5 361 49.3
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 4.8e-84 315.8 426 43.0
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.4e-83 313.5 427 42.4
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 5.3e-83 312.4 434 43.3
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.0e-83 311.6 414 45.7
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 9.0e-83 311.6 413 45.3
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.0e-82 310.5 431 42.9
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-81 307.4 417 44.4
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 2.4e-80 303.5 432 40.7
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 4.2e-80 302.8 403 44.2
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 9.3e-80 301.6 414 43.0
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.6e-78 295.4 428 40.4
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.9e-77 293.9 330 48.5
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 3.3e-77 293.1 385 44.7
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.6e-76 290.8 462 40.3
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 8.1e-76 288.5 422 41.2
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.6e-74 283.5 466 40.1
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 6.4e-73 278.9 435 40.2
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 2.1e-71 273.9 424 39.9
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 7.9e-71 271.9 415 41.0
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 8.1e-68 261.9 368 42.7
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.4e-67 260.4 406 38.9
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 4.6e-63 246.1 367 42.2
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 6.9e-59 232.3 426 34.7
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.4e-58 229.9 429 35.0
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.2e-57 227.3 372 36.8
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.8e-57 226.5 209 55.5
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 7.2e-56 222.2 354 38.4
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.6e-52 211.1 345 41.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.2e-49 200.7 413 31.2
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 2.2e-44 184.1 256 45.3
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 8.2e-44 182.2 158 58.9
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 5.3e-43 179.5 447 29.1
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.0e-42 177.6 385 31.7
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 4.4e-37 159.8 425 29.4
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.7e-36 157.9 394 29.2
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 1.1e-35 155.2 336 31.8
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 2.0e-34 151.0 423 30.0
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.8e-33 146.7 443 30.2
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 4.2e-32 143.3 188 43.6
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 9.4e-32 142.1 206 38.8
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 1.0e-30 138.7 463 25.5
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 6.5e-25 119.4 363 26.2
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 4.2e-24 116.7 106 52.8
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.6e-23 113.6 457 27.8
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 8.0e-23 112.5 88 60.2
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.1e-19 102.1 75 64.0
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.9e-18 96.3 212 30.2
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-17 94.7 242 31.0
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.9e-16 91.3 220 28.6
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.5e-16 90.9 207 30.4
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 7.5e-13 79.3 60 61.7
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.3e-12 78.6 56 60.7
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.1e-07 59.7 59 50.8


User provided reference genes

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