Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-79 298.5 149 100.0
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 8.7e-28 127.5 117 54.7
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.9e-19 99.8 49 98.0
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-18 95.9 48 95.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-18 95.9 48 95.8
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-18 95.9 48 95.8
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-18 95.9 48 95.8
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 6.9e-17 91.3 100 46.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.5e-16 90.1 48 87.5
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.5e-16 90.1 48 87.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.0e-16 89.7 48 85.4
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 7.6e-16 87.8 48 85.4
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 7.6e-16 87.8 47 85.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 3.8e-15 85.5 48 83.3
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 3.8e-15 85.5 48 83.3
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 3.8e-15 85.5 48 81.2
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 4.9e-15 85.1 48 81.2
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 6.4e-15 84.7 48 79.2
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 6.4e-15 84.7 48 79.2
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 6.4e-15 84.7 48 81.2
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 8.4e-15 84.3 49 75.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 8.4e-15 84.3 48 79.2
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.1e-14 84.0 48 77.1
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.4e-14 83.6 48 79.2
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.4e-14 83.6 48 79.2
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.9e-14 83.2 48 79.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.9e-14 83.2 48 79.2
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.9e-14 83.2 48 79.2
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 2.4e-14 82.8 48 79.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.4e-14 82.8 48 79.2
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.2e-14 82.4 48 77.1
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.2e-14 82.4 48 77.1
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.2e-14 82.0 48 72.9
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 4.2e-14 82.0 48 77.1
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 4.2e-14 82.0 48 75.0
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.2e-14 82.0 48 75.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.2e-14 82.0 47 78.7
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 5.4e-14 81.6 48 77.1
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 7.1e-14 81.3 48 77.1
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 7.1e-14 81.3 48 75.0
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 7.1e-14 81.3 48 75.0
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 7.1e-14 81.3 48 75.0
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 7.1e-14 81.3 48 77.1
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.2e-13 80.5 48 72.9
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 1.2e-13 80.5 48 77.1
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.2e-13 80.5 48 75.0
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.2e-13 80.5 48 75.0
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.2e-13 80.5 48 75.0
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.6e-13 80.1 48 75.0
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 2.1e-13 79.7 48 75.0
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.1e-13 79.7 48 72.9
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 2.1e-13 79.7 48 72.9
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 2.1e-13 79.7 48 68.8
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.7e-13 79.3 48 75.0
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.7e-13 79.3 48 75.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 2.7e-13 79.3 48 75.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.5e-13 79.0 48 75.0
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.5e-13 79.0 48 75.0
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 3.5e-13 79.0 48 68.8
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 3.5e-13 79.0 48 68.8
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.6e-13 78.6 48 72.9
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 6.0e-13 78.2 48 72.9
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 7.9e-13 77.8 48 72.9
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 7.9e-13 77.8 51 68.6
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.0e-12 77.4 49 69.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.0e-12 77.4 49 69.4
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.0e-12 77.4 49 69.4
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.0e-12 77.4 49 69.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.0e-12 77.4 48 72.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.0e-12 77.4 48 72.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.0e-12 77.4 48 70.8
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-12 77.0 48 72.9
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.3e-12 77.0 48 70.8
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.8e-12 76.6 49 69.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.8e-12 76.6 48 70.8
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.8e-12 76.6 48 70.8
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.3e-12 76.3 48 70.8
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 2.3e-12 76.3 48 70.8
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.3e-12 76.3 48 72.9
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.0e-12 75.9 48 68.8
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.0e-12 75.9 48 68.8
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 3.9e-12 75.5 48 66.7
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 3.9e-12 75.5 48 68.8
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 6.7e-12 74.7 46 71.7
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 8.7e-12 74.3 48 68.8
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.1e-11 73.9 48 68.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.1e-11 73.9 48 68.8
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.1e-11 73.9 64 53.1
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.5e-11 73.6 48 68.8
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.5e-11 73.6 48 64.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 2.5e-11 72.8 51 62.7
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.5e-11 72.8 48 66.7
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.5e-11 72.8 46 69.6
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.5e-11 72.8 48 68.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.3e-11 72.4 48 64.6
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 5.6e-11 71.6 48 66.7
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 7.4e-11 71.2 51 64.7
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 9.6e-11 70.9 48 66.7
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 9.6e-11 70.9 48 66.7
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.8e-10 69.3 48 64.6
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.8e-10 69.3 86 45.3
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 6.2e-10 68.2 48 60.4
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 8.1e-10 67.8 48 60.4
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 8.1e-10 67.8 48 64.6
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.8e-09 66.6 48 62.5
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 3.1e-09 65.9 45 66.7
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.1e-09 65.9 45 66.7
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.1e-09 65.9 45 68.9
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 3.1e-09 65.9 47 63.8
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 6.9e-09 64.7 48 58.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 9.0e-09 64.3 45 64.4
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 3.4e-08 62.4 45 62.2
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 4.5e-08 62.0 45 60.0
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 5.8e-08 61.6 45 60.0
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.7e-07 60.1 48 54.2
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 4.9e-07 58.5 51 45.1
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 9.3e-06 54.3 48 45.8


User provided reference genes

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