Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-44 183.0 90 100.0
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.9e-31 137.9 88 80.7
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.3e-22 108.2 90 65.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 4.3e-22 107.8 90 65.6
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 7.3e-22 107.1 90 63.3
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-21 105.9 90 63.3
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.1e-21 103.6 90 62.2
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.6e-19 98.6 80 60.0
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.6e-19 98.6 80 60.0
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 7.6e-19 97.1 87 64.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.2e-18 95.5 78 60.3
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.9e-18 95.1 84 57.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.9e-18 95.1 72 65.3
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 8.4e-18 93.6 77 59.7
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.1e-17 93.2 79 58.2
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.1e-17 93.2 79 58.2
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 3.5e-16 88.2 81 49.4
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 4.6e-16 87.8 81 55.6
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 3.0e-15 85.1 91 49.5
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 5.1e-15 84.3 80 52.5
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 2.5e-14 82.0 84 45.2
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.5e-14 82.0 71 50.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.3e-14 81.6 83 45.8
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.3e-14 81.6 83 47.0
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 7.3e-14 80.5 84 45.2
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 9.6e-14 80.1 68 60.3
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 9.6e-14 80.1 71 50.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.6e-13 79.3 81 49.4
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.6e-13 79.3 81 49.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.1e-12 76.6 71 56.3
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.8e-12 75.9 69 52.2
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 2.4e-12 75.5 83 44.6
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.4e-12 75.5 81 45.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 3.1e-12 75.1 74 50.0
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 3.1e-12 75.1 81 39.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.1e-12 75.1 81 46.9
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.9e-12 73.9 89 42.7
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 6.9e-12 73.9 80 46.2
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 6.9e-12 73.9 80 45.0
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 9.0e-12 73.6 85 47.1
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 9.0e-12 73.6 80 45.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.2e-11 73.2 85 44.7
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-11 73.2 80 45.0
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.5e-11 72.8 83 43.4
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 1.5e-11 72.8 80 47.5
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.0e-11 72.4 81 45.7
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.6e-11 72.0 81 45.7
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.6e-11 72.0 66 53.0
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.4e-11 71.6 83 44.6
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 3.4e-11 71.6 78 46.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 4.4e-11 71.2 67 47.8
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 5.8e-11 70.9 84 44.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.6e-11 70.5 81 40.7
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.6e-11 70.5 81 40.7
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 7.6e-11 70.5 67 52.2
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 7.6e-11 70.5 75 49.3
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 7.6e-11 70.5 75 49.3
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 7.6e-11 70.5 73 46.6
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.9e-11 70.1 89 41.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 9.9e-11 70.1 71 46.5
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 9.9e-11 70.1 72 50.0
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 9.9e-11 70.1 71 46.5
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.3e-10 69.7 73 49.3
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.3e-10 69.7 71 45.1
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.7e-10 69.3 72 44.4
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.7e-10 69.3 72 44.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.7e-10 69.3 72 44.4
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.2e-10 68.9 77 42.9
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.9e-10 68.6 73 46.6
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 3.8e-10 68.2 78 47.4
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 6.4e-10 67.4 82 41.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.4e-10 67.4 73 45.2
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.4e-10 67.4 73 45.2
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 6.4e-10 67.4 81 43.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 8.4e-10 67.0 71 43.7
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 8.4e-10 67.0 73 45.2
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.1e-09 66.6 73 45.2
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.1e-09 66.6 73 45.2
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.9e-09 65.9 72 45.8
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.2e-09 65.1 77 40.3
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 3.2e-09 65.1 82 46.3
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 3.2e-09 65.1 86 44.2
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 4.2e-09 64.7 75 45.3
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 5.4e-09 64.3 72 45.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 7.1e-09 63.9 78 42.3
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 9.3e-09 63.5 82 40.2
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.3e-09 63.5 71 43.7
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 9.3e-09 63.5 75 45.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-08 63.2 81 38.3
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-08 63.2 64 46.9
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.6e-08 62.8 78 41.0
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 3.5e-08 61.6 79 43.0
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.6e-08 61.2 63 46.0
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.0e-08 60.8 73 41.1
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 7.8e-08 60.5 82 39.0
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-07 59.3 63 44.4
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.3e-07 58.9 75 40.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 5.1e-07 57.8 73 45.2
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-06 56.6 80 38.8
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.9e-06 55.8 80 38.8
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.9e-06 55.8 90 36.7
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.5e-06 55.5 82 41.5
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.3e-06 55.1 90 36.7
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 4.3e-06 54.7 69 40.6
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 4.3e-06 54.7 73 42.5
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 5.6e-06 54.3 73 39.7
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 5.6e-06 54.3 73 39.7
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 7.3e-06 53.9 40 60.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 9.6e-06 53.5 73 39.7
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 9.6e-06 53.5 81 34.6
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.6e-06 53.5 73 38.4


User provided reference genes

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