Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 1.6e-52 209.9 175 100.0
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 7.2e-50 201.1 175 87.4
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 3.1e-24 115.9 101 67.3
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 4.9e-22 108.6 99 64.6
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.6e-20 103.6 105 54.3
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.6e-20 103.6 94 56.4
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 2.3e-19 99.8 93 63.4
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 3.0e-19 99.4 93 63.4
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 8.6e-19 97.8 68 75.0
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.5e-18 97.1 92 54.3
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 5.6e-18 95.1 104 59.6
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 9.5e-18 94.4 101 60.4
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.6e-17 93.6 92 62.0
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.6e-17 93.6 99 56.6
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 2.1e-17 93.2 101 50.5
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 2.1e-17 93.2 99 54.5
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 3.6e-17 92.4 138 40.6
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 3.6e-17 92.4 101 55.4
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 6.2e-17 91.7 93 62.4
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 8.1e-17 91.3 77 55.8
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 8.1e-17 91.3 93 51.6
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.8e-16 90.1 75 69.3
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 1.8e-16 90.1 93 51.6
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 2.3e-16 89.7 93 49.5
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.3e-16 89.7 131 50.4
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 5.2e-16 88.6 75 53.3
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.2e-16 88.6 101 47.5
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.2e-16 88.6 101 47.5
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.2e-15 87.4 102 45.1
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 2.0e-15 86.7 101 45.5
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.0e-15 86.7 76 53.9
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 2.6e-15 86.3 100 48.0
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.4e-15 85.9 100 52.0
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.3e-14 84.0 92 58.7
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 1.3e-14 84.0 100 42.0
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.3e-14 84.0 100 45.0
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 1.3e-14 84.0 69 73.9
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 1.3e-14 84.0 69 69.6
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 1.3e-14 84.0 100 56.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.7e-14 83.6 80 56.2
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 1.7e-14 83.6 83 59.0
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.7e-14 83.6 70 70.0
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 1.7e-14 83.6 100 58.0
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 2.2e-14 83.2 101 48.5
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 2.9e-14 82.8 101 48.5
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.7e-14 82.4 101 48.5
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 3.7e-14 82.4 95 53.7
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 3.7e-14 82.4 72 54.2
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 3.7e-14 82.4 77 59.7
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 3.7e-14 82.4 98 50.0
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 3.7e-14 82.4 98 50.0
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 6.4e-14 81.6 91 44.0
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.1e-13 80.9 101 45.5
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 1.1e-13 80.9 74 51.4
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 1.1e-13 80.9 96 44.8
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.4e-13 80.5 101 53.5
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 1.4e-13 80.5 101 45.5
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.4e-13 80.5 98 48.0
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.9e-13 80.1 66 54.5
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.9e-13 80.1 101 45.5
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 2.4e-13 79.7 95 44.2
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 2.4e-13 79.7 104 49.0
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 2.4e-13 79.7 99 43.4
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.4e-13 79.7 96 44.8
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.2e-13 79.3 101 44.6
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.2e-13 79.3 131 47.3
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 3.2e-13 79.3 84 47.6
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 4.1e-13 79.0 92 59.8
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.1e-13 79.0 92 55.4
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 4.1e-13 79.0 68 52.9
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 5.4e-13 78.6 62 61.3
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 7.1e-13 78.2 88 42.0
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.1e-13 78.2 92 59.8
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.1e-13 78.2 91 62.6
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 7.1e-13 78.2 92 45.7
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 7.1e-13 78.2 101 53.5
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 7.1e-13 78.2 93 52.7
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 7.1e-13 78.2 66 54.5
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 7.1e-13 78.2 66 54.5
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 7.1e-13 78.2 101 51.5
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 7.1e-13 78.2 98 42.9
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 9.2e-13 77.8 101 44.6
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 9.2e-13 77.8 74 51.4
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.2e-12 77.4 92 59.8
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-12 77.4 99 54.5
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.2e-12 77.4 93 54.8
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 2.1e-12 76.6 93 55.9
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.7e-12 76.3 101 43.6
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.7e-12 76.3 130 36.9
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 3.5e-12 75.9 68 66.2
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 4.6e-12 75.5 76 60.5
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 6.0e-12 75.1 98 42.9
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 7.8e-12 74.7 67 52.2
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.0e-11 74.3 68 50.0
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 1.0e-11 74.3 101 52.5
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 1.3e-11 73.9 93 47.3
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.7e-11 73.6 39 69.2
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.7e-11 73.6 39 69.2
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.7e-11 73.6 98 37.8
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.7e-11 73.6 39 69.2
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 2.3e-11 73.2 99 40.4
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 2.3e-11 73.2 97 36.1
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.3e-11 73.2 71 47.9
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 3.0e-11 72.8 100 38.0
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 3.0e-11 72.8 100 44.0
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 3.0e-11 72.8 93 40.9
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 3.9e-11 72.4 93 60.2
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 6.6e-11 71.6 135 45.2
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 6.6e-11 71.6 101 52.5
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 6.6e-11 71.6 89 46.1
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 8.6e-11 71.2 101 42.6
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.6e-11 71.2 98 37.8
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 8.6e-11 71.2 38 76.3
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.1e-10 70.9 69 52.2
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.5e-10 70.5 94 42.6
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.5e-10 70.5 93 39.8
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 1.5e-10 70.5 98 46.9
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.3e-10 69.3 107 40.2
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 5.6e-10 68.6 98 45.9
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 5.6e-10 68.6 98 45.9
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 5.6e-10 68.6 61 50.8
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 5.6e-10 68.6 61 50.8
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 5.6e-10 68.6 68 39.7
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 7.3e-10 68.2 76 44.7
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 1.2e-09 67.4 60 45.0
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 2.1e-09 66.6 95 37.9
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 2.1e-09 66.6 99 43.4
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 2.1e-09 66.6 75 42.7
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 2.8e-09 66.2 94 42.6
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.6e-09 65.9 94 37.2
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 4.7e-09 65.5 100 49.0
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 8.1e-09 64.7 41 63.4
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.1e-08 64.3 60 50.0
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.1e-08 64.3 52 50.0
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 1.8e-08 63.5 90 44.4
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 2.4e-08 63.2 74 56.8
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 2.4e-08 63.2 58 44.8
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.1e-08 62.8 95 35.8
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 5.2e-08 62.0 68 41.2
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.8e-08 61.6 87 36.8
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 8.9e-08 61.2 93 35.5
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 8.9e-08 61.2 39 61.5
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.2e-07 60.8 38 63.2
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 1.2e-07 60.8 95 35.8
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 1.5e-07 60.5 97 34.0
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 2.0e-07 60.1 61 39.3
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 2.0e-07 60.1 91 36.3
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 3.4e-07 59.3 47 48.9
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 3.4e-07 59.3 128 43.0
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 4.4e-07 58.9 92 32.6
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 4.4e-07 58.9 47 51.1
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 4.4e-07 58.9 70 44.3
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 7.6e-07 58.2 45 51.1
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 7.6e-07 58.2 37 59.5
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 9.9e-07 57.8 47 55.3
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 9.9e-07 57.8 47 48.9
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 1.3e-06 57.4 39 61.5
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.3e-06 57.4 93 32.3
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-06 57.4 45 51.1
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.3e-06 57.4 65 40.0
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.3e-06 57.4 59 44.1
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.7e-06 57.0 111 43.2
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 1.7e-06 57.0 101 35.6
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.7e-06 57.0 99 34.3
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 2.2e-06 56.6 76 36.8
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 2.2e-06 56.6 47 53.2
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 2.2e-06 56.6 47 53.2
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 2.2e-06 56.6 98 33.7
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.2e-06 56.6 70 32.9
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.9e-06 56.2 60 40.0
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.9e-06 56.2 58 43.1
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 2.9e-06 56.2 35 65.7
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 3.8e-06 55.8 86 36.0
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 3.8e-06 55.8 66 34.8
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 3.8e-06 55.8 37 62.2
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 3.8e-06 55.8 37 62.2
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 4.9e-06 55.5 69 37.7
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 6.4e-06 55.1 47 51.1
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 6.4e-06 55.1 60 40.0
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 6.4e-06 55.1 66 42.4
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 8.4e-06 54.7 37 59.5
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 8.4e-06 54.7 47 53.2
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 8.4e-06 54.7 37 56.8


User provided reference genes

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