Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZL62QC Arachis hypogaea HOM05D003550 ORTHO05D004336 4.0e-40 167.5 79 100.0
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 1.7e-27 125.6 64 92.2
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 2.3e-27 125.2 64 92.2
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 1.1e-26 122.9 66 84.8
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 1.2e-25 119.4 65 81.5
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 1.2e-25 119.4 65 84.6
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 4.7e-25 117.5 65 81.5
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 6.2e-25 117.1 66 81.8
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 8.1e-25 116.7 63 82.5
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 1.4e-24 115.9 64 81.2
Lj9C657G2 Lonicera japonica HOM05D003550 ORTHO05D004336 3.1e-24 114.8 71 71.8
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 4.0e-24 114.4 66 77.3
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 5.2e-24 114.0 65 78.5
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 5.2e-24 114.0 65 81.5
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 9.0e-24 113.2 65 80.0
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 2.0e-23 112.1 65 78.5
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 2.6e-23 111.7 63 77.8
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 3.4e-23 111.3 64 78.1
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 3.4e-23 111.3 64 78.1
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 3.4e-23 111.3 65 78.5
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 5.8e-23 110.5 65 78.5
CDE09G0620 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 5.8e-23 110.5 66 74.2
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.3e-22 109.4 65 76.9
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.3e-22 109.4 65 76.9
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 1.7e-22 109.0 65 76.9
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 1.7e-22 109.0 65 75.4
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 2.2e-22 108.6 64 76.6
CDE02G1072 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 2.2e-22 108.6 65 73.8
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 2.9e-22 108.2 65 75.4
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 2.9e-22 108.2 68 70.6
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 2.9e-22 108.2 65 75.4
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 2.9e-22 108.2 66 72.7
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 2.9e-22 108.2 64 75.0
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 2.9e-22 108.2 64 75.0
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 3.8e-22 107.8 65 73.8
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 3.8e-22 107.8 65 75.4
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 3.8e-22 107.8 65 73.8
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 3.8e-22 107.8 65 73.8
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 3.8e-22 107.8 65 73.8
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 4.9e-22 107.5 65 72.3
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 4.9e-22 107.5 65 72.3
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 4.9e-22 107.5 64 75.0
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 4.9e-22 107.5 64 75.0
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 4.9e-22 107.5 65 73.8
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 6.4e-22 107.1 65 73.8
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 6.4e-22 107.1 65 73.8
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 6.4e-22 107.1 66 72.7
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 8.4e-22 106.7 65 75.4
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 8.4e-22 106.7 65 75.4
Cpa.g.sc169.51 Carica papaya HOM05D003550 ORTHO05D004336 1.1e-21 106.3 64 75.0
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.1e-21 106.3 65 73.8
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 1.1e-21 106.3 65 73.8
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.4e-21 105.9 65 72.3
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.4e-21 105.9 67 74.6
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 1.4e-21 105.9 65 73.8
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 1.4e-21 105.9 65 72.3
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 1.9e-21 105.5 64 75.0
Atru.chr12.1265 Acer truncatum HOM05D003550 ORTHO05D004336 2.4e-21 105.1 65 73.8
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 2.4e-21 105.1 65 73.8
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 2.4e-21 105.1 65 70.8
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 3.2e-21 104.8 64 75.0
vmacro13761 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 3.2e-21 104.8 63 74.6
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 4.2e-21 104.4 79 65.8
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 4.2e-21 104.4 64 71.9
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 5.4e-21 104.0 67 71.6
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 9.3e-21 103.2 67 71.6
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 9.3e-21 103.2 79 64.6
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 9.3e-21 103.2 67 71.6
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 9.3e-21 103.2 66 69.7
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 1.2e-20 102.8 65 67.7
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 1.2e-20 102.8 65 67.7
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.2e-20 102.8 67 73.1
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.2e-20 102.8 67 73.1
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 1.2e-20 102.8 65 66.2
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 2.1e-20 102.1 64 73.4
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 2.1e-20 102.1 66 69.7
Ah.10g030140 Amaranthus hybridus HOM05D003550 ORTHO05D004336 2.7e-20 101.7 65 69.2
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 2.7e-20 101.7 65 67.7
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 2.7e-20 101.7 65 67.7
AagrBONN_evm.TU.Sc2ySwM_344.1602 Anthoceros agrestis HOM05D003550 ORTHO05D004336 3.5e-20 101.3 65 67.7
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 3.5e-20 101.3 65 70.8
Eucgr.G03219 Eucalyptus grandis HOM05D003550 ORTHO05D004336 4.6e-20 100.9 64 70.3
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 4.6e-20 100.9 79 64.6
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 4.6e-20 100.9 64 70.3
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 4.6e-20 100.9 75 66.7
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 4.6e-20 100.9 75 66.7
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 6.0e-20 100.5 65 66.2
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 6.0e-20 100.5 65 66.2
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 6.0e-20 100.5 64 71.9
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 7.8e-20 100.1 64 71.9
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 1.0e-19 99.8 65 67.7
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 1.0e-19 99.8 65 66.2
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 1.0e-19 99.8 65 66.2
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 1.3e-19 99.4 65 66.2
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.3e-19 99.4 66 68.2
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 1.7e-19 99.0 69 69.6
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 1.7e-19 99.0 64 68.8
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 1.7e-19 99.0 64 68.8
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 2.3e-19 98.6 65 64.6
ATR0782G088 Amborella trichopoda HOM05D003550 ORTHO05D004336 3.9e-19 97.8 65 66.2
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 3.9e-19 97.8 64 70.3
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 3.9e-19 97.8 64 70.3
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 3.9e-19 97.8 66 72.7
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 5.1e-19 97.4 65 63.1
MD02G1282100 Malus domestica HOM05D003550 ORTHO05D004336 8.7e-19 96.7 64 68.8
Glyma.15G233001 Glycine max HOM05D003550 ORTHO05D004336 3.3e-18 94.7 67 64.2
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 3.3e-18 94.7 65 66.2
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 3.3e-18 94.7 65 61.5
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 4.3e-18 94.4 65 64.6
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 4.3e-18 94.4 64 67.2
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 5.6e-18 94.0 64 67.2
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 7.3e-18 93.6 70 61.4
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.3e-17 92.8 64 67.2
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 3.6e-17 91.3 64 62.5
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 3.6e-17 91.3 64 65.6
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 4.8e-17 90.9 65 63.1
Actinidia24461 Actinidia chinensis HOM05D003550 ORTHO05D004336 6.2e-17 90.5 65 61.5
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 8.1e-17 90.1 64 64.1
arahy.Tifrunner.gnm1.ann1.2K1FXD Arachis hypogaea HOM05D003550 ORTHO05D004336 1.1e-16 89.7 48 87.5
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 1.1e-16 89.7 64 64.1
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 1.4e-16 89.4 65 60.0
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 6.9e-16 87.0 72 62.5
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 6.9e-16 87.0 72 61.1
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 9.0e-16 86.7 66 59.1
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 1.5e-15 85.9 66 57.6
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 1.5e-15 85.9 66 62.1
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 1.5e-15 85.9 66 60.6
Sabra16G0169400 Salix brachista HOM05D003550 ORTHO05D004336 3.4e-15 84.7 72 59.7
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 5.8e-15 84.0 66 57.6
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 9.9e-15 83.2 70 52.9
arahy.Tifrunner.gnm1.ann1.S4G3U6 Arachis hypogaea HOM05D003550 ORTHO05D004336 1.7e-14 82.4 61 68.9
BcaC02g08867 Brassica carinata HOM05D000052 ORTHO05D000046 2.9e-14 81.6 56 64.3
arahy.Tifrunner.gnm1.ann1.SS96TB Arachis hypogaea HOM05D003550 ORTHO05D004336 1.5e-10 69.3 37 89.2
BolC2t06569H Brassica oleracea HOM05D003550 ORTHO05D004336 3.7e-09 64.7 45 66.7
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 4.8e-09 64.3 44 61.4
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 6.9e-08 60.5 71 39.4
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 6.9e-08 60.5 44 59.1
BcaB01g02474 Brassica carinata HOM05D003550 ORTHO05D004336 1.3e-06 56.2 53 52.8
SHI04011 Sapria himalayana HOM05D003550 ORTHO05D004336 4.9e-06 54.3 63 44.4


User provided reference genes

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