Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 6.9e-140 500.7 273 100.0
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 3.2e-137 491.9 273 98.2
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 2.1e-96 356.3 266 71.8
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 3.6e-96 355.5 270 74.4
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 4.7e-96 355.1 266 72.2
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.7e-96 355.1 273 75.8
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 8.8e-95 350.9 276 71.7
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 2.0e-94 349.7 249 77.5
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 3.3e-94 349.0 251 78.5
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 7.5e-94 347.8 251 78.1
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 7.5e-94 347.8 274 68.2
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.7e-93 346.7 273 67.4
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 4.8e-93 345.1 253 71.1
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.1e-92 344.0 251 72.5
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 1.4e-92 343.6 292 63.7
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.8e-92 343.2 259 73.7
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.8e-92 343.2 259 73.7
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 2.4e-92 342.8 246 72.4
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 7.0e-92 341.3 286 69.2
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 7.0e-92 341.3 260 75.8
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 9.1e-92 340.9 242 77.7
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 9.1e-92 340.9 242 77.7
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 9.1e-92 340.9 242 77.7
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.0e-91 339.7 240 75.4
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 2.7e-91 339.3 247 71.3
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 7.7e-91 337.8 213 85.0
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 7.7e-91 337.8 271 66.1
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 5.0e-90 335.1 274 64.6
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 8.5e-90 334.3 239 79.1
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.1e-89 334.0 236 78.0
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.5e-89 333.6 211 77.7
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.5e-89 333.6 232 72.4
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 4.2e-89 332.0 286 69.9
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 5.5e-89 331.6 312 59.3
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.6e-88 330.1 207 84.5
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.6e-88 330.1 266 71.8
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.7e-88 329.3 246 75.6
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 8.0e-88 327.8 250 73.6
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 8.0e-88 327.8 280 67.1
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 1.0e-87 327.4 245 76.3
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.0e-87 325.5 247 74.5
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.0e-87 325.5 261 70.5
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.2e-87 325.1 260 66.5
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 5.2e-87 325.1 274 68.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.2e-86 323.9 237 75.9
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 2.0e-86 323.2 271 69.7
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.6e-86 322.8 246 74.4
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.6e-86 322.8 246 74.4
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 5.7e-86 321.6 237 69.6
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.7e-86 321.6 267 64.4
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.3e-85 320.5 210 83.8
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.2e-85 319.7 246 74.0
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 4.8e-85 318.5 246 73.6
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 6.3e-85 318.2 259 69.9
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 8.3e-85 317.8 250 66.0
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 8.3e-85 317.8 240 75.0
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 8.3e-85 317.8 241 75.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.4e-84 317.0 296 65.5
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 3.1e-84 315.8 210 82.9
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 7.0e-84 314.7 261 67.0
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 9.1e-84 314.3 249 72.7
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.2e-83 313.9 238 68.5
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.0e-83 313.2 252 65.9
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.7e-83 312.8 240 73.8
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 4.5e-83 312.0 248 71.0
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 4.5e-83 312.0 258 61.2
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 2.3e-82 309.7 241 73.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.3e-82 309.7 219 75.3
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.3e-82 309.7 236 69.1
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 3.8e-82 308.9 245 71.8
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 6.6e-82 308.1 241 73.4
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 6.6e-82 308.1 219 74.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 7.2e-81 304.7 211 71.1
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-80 303.9 196 75.0
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 4.7e-80 302.0 270 64.8
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 8.0e-80 301.2 235 73.6
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 3.0e-79 299.3 210 78.1
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 4.0e-79 298.9 241 70.1
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 2.6e-78 296.2 239 66.9
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.8e-78 294.3 271 64.6
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 9.8e-78 294.3 266 59.8
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.3e-77 293.9 265 58.5
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.7e-77 293.5 214 68.2
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.8e-77 292.7 239 72.8
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.1e-76 290.8 241 64.7
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 1.4e-76 290.4 247 63.6
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 3.2e-76 289.3 271 64.2
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 2.7e-75 286.2 284 56.0
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.7e-75 286.2 190 74.2
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 2.3e-74 283.1 234 65.0
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 2.9e-74 282.7 224 73.2
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.3e-73 278.9 241 62.7
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 2.8e-72 276.2 221 66.5
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 8.0e-72 274.6 217 70.5
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 4.0e-71 272.3 287 56.1
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 5.2e-71 271.9 235 63.0
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.0e-70 270.0 284 53.9
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.7e-69 266.9 211 64.5
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 7.0e-68 261.5 213 63.8
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 3.0e-66 256.1 205 63.9
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 9.5e-65 251.1 140 82.1
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 1.2e-64 250.8 195 74.9
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 4.7e-64 248.8 268 57.5
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 6.4e-53 211.8 176 73.9
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.2e-52 209.5 133 74.4
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 1.5e-46 190.7 252 48.0
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.9e-41 173.7 134 65.7
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.5e-41 173.3 192 53.1
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 9.6e-33 144.8 185 42.7
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 9.9e-30 134.8 204 45.6
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 4.9e-29 132.5 145 56.6
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.2e-27 127.9 145 55.2
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.5e-27 126.3 179 45.3
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.8e-26 124.0 70 82.9
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 7.4e-25 118.6 126 55.6
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 2.9e-21 106.7 115 54.8
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 8.4e-21 105.1 55 92.7
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 3.2e-20 103.2 113 69.0
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 5.5e-20 102.4 114 55.3
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.9e-17 94.0 131 38.2
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.6e-17 91.7 75 61.3
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.1e-16 90.5 109 41.3
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 4.8e-16 89.4 70 70.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.0e-10 71.6 144 30.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.9e-10 69.7 147 33.3
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.1e-10 69.3 148 33.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.5e-09 67.0 160 33.1
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.2e-08 63.9 138 31.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.8e-08 63.5 141 32.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 6.3e-08 62.4 136 29.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.8e-07 60.8 136 30.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.8e-07 60.8 115 31.3
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.4e-07 60.5 134 29.9
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 2.4e-07 60.5 138 29.0
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.1e-07 60.1 115 33.0
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 5.3e-07 59.3 53 62.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.5e-06 57.8 134 29.1
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 2.0e-06 57.4 134 32.1
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 7.7e-06 55.5 37 78.4


User provided reference genes

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