Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 9.3e-117 423.7 237 100.0
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.0e-116 421.0 237 99.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 6.1e-84 314.7 254 74.4
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 7.9e-84 314.3 254 71.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 6.7e-83 311.2 255 69.4
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.5e-82 310.1 251 71.3
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.0e-82 309.7 254 68.9
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 9.7e-82 307.4 256 72.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.7e-81 306.6 254 70.1
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.8e-81 305.8 256 72.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.0e-80 301.2 254 67.3
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 9.1e-80 300.8 256 70.3
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.2e-79 300.4 256 70.3
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.2e-79 300.4 250 72.4
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.0e-79 299.7 256 73.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.6e-79 299.3 250 72.0
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 5.9e-79 298.1 256 69.9
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 7.7e-79 297.7 254 69.7
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 3.8e-78 295.4 255 68.2
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 6.5e-78 294.7 254 68.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.9e-77 293.1 253 71.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.5e-77 292.7 255 67.8
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 7.2e-77 291.2 255 71.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 9.4e-77 290.8 254 70.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.2e-76 290.4 261 69.0
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.7e-76 289.3 255 68.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 6.1e-76 288.1 255 68.2
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.4e-75 287.0 254 69.3
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.2e-75 285.0 250 69.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 6.7e-75 284.6 256 66.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.1e-74 283.9 253 66.4
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.1e-74 283.9 254 68.9
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.1e-74 283.9 253 69.6
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.1e-74 283.9 259 67.6
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 2.6e-74 282.7 251 68.5
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 4.4e-74 282.0 248 70.2
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 7.4e-74 281.2 246 68.7
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 7.4e-74 281.2 254 67.7
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 2.8e-73 279.3 251 68.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.8e-73 279.3 245 69.0
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 4.8e-73 278.5 251 69.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.8e-73 278.5 251 67.7
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 8.2e-73 277.7 256 67.2
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 8.2e-73 277.7 257 65.8
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.4e-72 276.9 255 64.7
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.4e-72 276.9 254 63.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.4e-72 276.9 257 66.5
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.4e-72 276.9 256 64.5
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 3.1e-72 275.8 251 66.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 5.3e-72 275.0 254 63.8
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 7.0e-72 274.6 244 69.7
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 7.0e-72 274.6 253 65.2
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.2e-71 273.9 254 65.4
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.2e-71 273.9 245 67.3
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.6e-71 272.7 249 64.7
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.6e-71 272.7 257 66.1
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.5e-71 272.3 259 64.1
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 4.5e-71 271.9 255 63.1
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.2e-70 269.6 252 64.7
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.9e-70 269.2 276 58.7
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.5e-70 268.1 243 63.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 2.5e-69 266.2 250 65.2
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 3.2e-69 265.8 246 66.7
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 3.2e-69 265.8 256 66.0
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 3.2e-69 265.8 248 65.3
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.2e-68 263.8 248 65.3
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.1e-68 263.1 236 68.2
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 3.6e-68 262.3 242 67.4
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 3.6e-68 262.3 242 67.8
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 4.7e-68 261.9 246 66.3
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 4.7e-68 261.9 234 68.4
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.0e-67 260.8 254 63.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.0e-67 260.8 249 65.1
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.4e-67 260.4 257 64.2
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 3.0e-67 259.2 267 59.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 8.8e-67 257.7 245 65.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.8e-67 257.7 257 65.0
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.2e-66 257.3 256 62.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.0e-66 256.5 249 65.1
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 4.4e-66 255.4 238 68.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 5.7e-66 255.0 257 64.2
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 5.7e-66 255.0 245 64.1
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.7e-65 253.4 217 64.1
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.2e-65 253.1 243 64.6
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 2.2e-65 253.1 237 66.7
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 3.7e-65 252.3 237 65.8
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.4e-64 250.4 202 68.3
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-64 250.0 236 65.3
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.4e-64 249.6 245 60.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 3.1e-64 249.2 243 64.6
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 4.1e-64 248.8 273 59.7
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 5.3e-64 248.4 260 60.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-63 247.3 246 63.4
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 2.7e-63 246.1 247 62.3
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.5e-63 245.4 347 48.4
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 7.7e-63 244.6 228 62.3
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 7.7e-63 244.6 246 62.6
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.0e-62 244.2 297 55.2
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.3e-62 243.8 256 60.5
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.7e-62 243.4 246 58.1
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 4.2e-61 238.8 247 59.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.2e-60 237.3 249 60.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-60 236.5 249 58.6
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 6.1e-60 235.0 243 58.8
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 5.2e-59 231.9 247 57.5
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 5.7e-58 228.4 252 58.7
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.2e-57 226.5 196 63.8
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.0e-54 217.6 220 57.3
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.1e-53 214.2 252 54.8
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.2e-53 211.5 334 47.3
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 3.6e-52 209.1 246 52.4
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 8.9e-51 204.5 290 50.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.4e-50 202.6 235 57.9
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.3e-49 200.7 245 49.0
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.2e-49 199.9 247 53.0
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.6e-47 193.7 245 54.3
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.7e-46 190.3 133 76.7
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 8.0e-44 181.4 243 51.9
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.8e-43 180.3 163 66.3
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.9e-43 177.9 244 50.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.5e-42 177.2 130 74.6
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.9e-41 172.2 148 70.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.0e-38 164.5 227 49.3
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 3.9e-38 162.5 232 45.3
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.6e-38 161.8 326 43.3
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 4.3e-37 159.1 230 50.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-35 153.7 137 65.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.0e-35 152.5 148 61.5
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 9.8e-34 147.9 108 83.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 2.1e-31 140.2 138 62.3
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 8.6e-30 134.8 120 72.5
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.1e-28 130.2 256 38.3
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-27 126.7 166 48.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.1e-27 126.3 142 52.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 4.4e-26 122.5 167 56.3
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.4e-24 115.5 60 91.7
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 6.2e-20 102.1 225 33.3
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 6.8e-19 98.6 227 34.8
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 5.1e-14 82.4 230 30.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 6.2e-12 75.5 78 61.5
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.4e-11 74.3 47 78.7
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.2e-09 67.0 115 42.6
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 6.4e-09 65.5 91 44.0
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 3.2e-08 63.2 50 68.0
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.5e-07 59.7 168 32.7
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.0e-06 56.6 34 70.6


User provided reference genes

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