Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 9.1e-170 600.1 299 100.0
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 2.5e-111 406.0 240 86.7
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 9.1e-85 317.8 240 69.6
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 6.7e-80 301.6 244 64.8
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 1.8e-77 293.5 242 64.0
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 2.4e-77 293.1 240 63.8
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 5.9e-76 288.5 240 62.9
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 1.0e-75 287.7 244 62.7
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 8.0e-73 278.1 222 64.9
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 3.3e-71 272.7 223 62.3
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 4.4e-71 272.3 243 58.8
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 4.4e-71 272.3 257 56.4
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 8.2e-70 268.1 223 64.6
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 8.2e-70 268.1 243 58.0
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 2.4e-69 266.5 243 57.6
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 9.1e-69 264.6 242 56.6
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 5.9e-68 261.9 242 57.4
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 2.2e-67 260.0 242 57.0
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 8.5e-67 258.1 243 56.4
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 1.5e-66 257.3 243 56.4
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 1.9e-66 256.9 243 56.0
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 3.2e-66 256.1 251 55.0
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 3.2e-66 256.1 243 56.4
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 3.2e-66 256.1 243 58.0
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 4.2e-66 255.8 252 54.8
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 1.2e-65 254.2 240 56.2
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 1.6e-65 253.8 240 56.2
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 6.1e-65 251.9 243 55.1
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 8.0e-65 251.5 244 54.9
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 2.3e-64 250.0 243 57.2
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 4.0e-64 249.2 249 53.8
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 1.2e-63 247.7 244 55.3
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 2.6e-63 246.5 240 54.6
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.4e-63 245.7 247 52.2
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.4e-63 245.7 247 52.2
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 4.4e-63 245.7 243 51.0
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 1.7e-62 243.8 243 53.9
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 2.8e-62 243.0 226 58.0
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 3.7e-62 242.7 243 54.3
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 1.1e-61 241.1 244 51.2
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 1.4e-61 240.7 245 52.2
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 3.1e-61 239.6 223 55.6
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 7.0e-61 238.4 223 57.8
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 1.6e-60 237.3 243 53.5
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 1.6e-60 237.3 243 49.4
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 3.5e-60 236.1 250 51.6
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 4.5e-60 235.7 243 51.4
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 7.7e-60 235.0 250 51.6
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 1.0e-59 234.6 251 49.4
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.7e-59 233.8 242 53.7
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 1.7e-59 233.8 243 51.4
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 5.0e-59 232.3 244 50.8
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 1.9e-58 230.3 250 51.2
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 7.2e-58 228.4 245 51.4
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 1.6e-57 227.3 244 51.6
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 1.6e-57 227.3 243 51.9
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 2.1e-57 226.9 245 50.6
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 2.1e-57 226.9 246 50.8
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 2.7e-57 226.5 245 50.6
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 2.7e-57 226.5 220 53.2
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 3.6e-57 226.1 244 51.2
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 1.0e-56 224.6 240 50.0
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 1.0e-56 224.6 240 52.5
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 1.8e-56 223.8 241 50.6
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 1.8e-56 223.8 247 49.4
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 1.8e-56 223.8 244 51.2
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 2.3e-56 223.4 247 47.0
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 5.2e-56 222.2 242 51.7
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 6.8e-56 221.9 240 49.2
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 8.8e-56 221.5 242 47.5
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 1.7e-54 217.2 243 49.8
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 8.3e-54 214.9 228 49.6
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 1.2e-52 211.1 245 46.9
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.6e-52 210.7 210 52.4
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 1.6e-52 210.7 226 50.0
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 2.7e-52 209.9 247 44.1
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 3.5e-52 209.5 246 45.1
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 7.7e-52 208.4 242 50.4
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 1.0e-51 208.0 245 44.9
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 1.0e-51 208.0 245 44.9
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 3.8e-51 206.1 247 44.9
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 6.6e-51 205.3 247 44.1
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 1.5e-50 204.1 248 46.0
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 2.5e-50 203.4 245 49.0
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 3.3e-50 203.0 236 50.4
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 4.2e-50 202.6 246 42.3
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 9.5e-50 201.4 264 41.3
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 1.2e-49 201.1 247 44.1
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 2.8e-49 199.9 247 43.7
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 4.0e-48 196.1 135 68.1
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 4.0e-48 196.1 223 47.1
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 1.2e-47 194.5 241 45.2
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 3.4e-47 193.0 240 47.5
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 1.3e-46 191.0 240 45.4
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 4.1e-45 186.0 240 46.2
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 4.3e-42 176.0 135 62.2
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 5.6e-42 175.6 235 45.1
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 2.1e-41 173.7 225 42.7
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 3.6e-41 172.9 234 41.5
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 8.0e-41 171.8 242 44.2
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 1.1e-34 151.4 252 37.7
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 5.8e-31 139.0 186 46.2
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 9.8e-31 138.3 131 50.4
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 1.2e-28 131.3 248 35.5
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 3.5e-28 129.8 250 33.6
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 4.3e-26 122.9 213 34.7
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 3.0e-19 100.1 108 43.5
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 1.3e-11 74.7 83 54.2
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 3.3e-10 70.1 108 36.1
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 1.3e-09 68.2 51 51.0
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 8.1e-09 65.5 178 31.5


User provided reference genes

Program Settings