Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 6.5e-179 630.6 310 100.0
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 3.1e-173 611.7 327 93.0
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 9.3e-117 424.1 337 64.1
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 1.6e-113 413.3 346 62.4
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 2.8e-113 412.5 354 60.7
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 8.4e-110 401.0 351 58.7
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 1.2e-108 397.1 308 63.6
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 7.9e-92 341.3 319 53.3
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 1.5e-90 337.0 304 56.9
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 1.5e-90 337.0 333 51.4
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.5e-90 337.0 322 53.4
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 3.3e-90 335.9 340 50.9
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 5.7e-90 335.1 248 64.9
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 3.7e-89 332.4 344 48.5
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 4.8e-89 332.0 306 53.6
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 8.2e-89 331.3 304 53.6
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 1.1e-88 330.9 321 52.0
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 1.8e-88 330.1 298 55.4
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 3.1e-88 329.3 292 54.1
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 6.9e-88 328.2 303 53.5
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 9.1e-88 327.8 319 49.5
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 9.1e-88 327.8 297 54.9
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 9.1e-88 327.8 328 52.1
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 1.2e-87 327.4 326 52.1
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 2.0e-87 326.6 334 49.1
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 5.9e-87 325.1 321 49.8
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 5.9e-87 325.1 293 53.9
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 7.7e-87 324.7 328 50.6
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 3.8e-86 322.4 322 49.4
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 1.9e-85 320.1 323 49.2
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 2.5e-85 319.7 295 51.5
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 2.5e-85 319.7 305 50.8
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 4.2e-85 318.9 303 54.5
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 7.2e-85 318.2 295 50.8
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 9.4e-85 317.8 309 50.8
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 2.7e-84 316.2 298 51.0
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 4.7e-84 315.5 305 51.5
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 4.7e-84 315.5 307 50.8
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 4.7e-84 315.5 300 50.0
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 6.1e-84 315.1 309 50.2
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 1.0e-83 314.3 309 49.8
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.4e-83 313.9 301 50.5
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 8.8e-83 311.2 275 51.3
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.5e-82 310.5 307 48.9
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 9.7e-82 307.8 306 51.6
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 6.3e-81 305.1 337 47.5
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 6.3e-81 305.1 325 47.4
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 8.2e-81 304.7 320 46.6
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.4e-80 303.1 286 50.7
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 4.1e-80 302.4 319 48.9
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 5.3e-80 302.0 307 47.6
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 7.0e-80 301.6 307 48.9
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 3.5e-79 299.3 291 50.5
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 1.0e-78 297.7 328 45.1
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.7e-78 297.0 292 50.3
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 2.2e-78 296.6 283 50.9
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 2.2e-78 296.6 297 49.8
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 2.2e-78 296.6 326 45.1
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 2.9e-78 296.2 307 48.2
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 1.1e-77 294.3 291 49.1
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 1.5e-77 293.9 279 51.6
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 1.9e-77 293.5 323 46.1
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 1.9e-77 293.5 307 47.6
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 2.7e-76 289.7 249 55.0
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 4.7e-76 288.9 306 49.7
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.4e-75 287.3 281 50.5
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 5.2e-75 285.4 346 45.7
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 5.2e-75 285.4 263 49.8
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 1.2e-74 284.3 311 46.9
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 3.3e-74 282.7 297 47.5
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 5.7e-74 282.0 317 46.4
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 1.3e-73 280.8 289 49.8
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 1.3e-73 280.8 298 45.0
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 2.2e-73 280.0 469 35.6
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 2.4e-72 276.6 279 49.8
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 1.2e-71 274.2 279 49.1
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 7.7e-71 271.6 279 48.7
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 3.2e-69 266.2 235 54.0
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 4.7e-68 262.3 248 51.6
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 1.4e-67 260.8 234 53.0
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 1.8e-67 260.4 237 49.8
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 4.0e-67 259.2 255 50.6
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 1.5e-66 257.3 340 42.4
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.6e-66 256.5 384 38.0
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 1.6e-60 237.3 343 41.4
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 3.4e-58 229.6 296 38.9
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 4.4e-58 229.2 210 52.9
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 7.5e-58 228.4 256 46.1
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 2.0e-55 220.3 198 56.1
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 4.7e-52 209.1 199 51.8
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.8e-51 207.2 304 36.5
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 4.0e-51 206.1 175 54.3
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 6.8e-51 205.3 175 54.3
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 6.8e-51 205.3 281 39.1
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 8.3e-49 198.4 150 63.3
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 4.3e-45 186.0 297 37.4
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 1.1e-43 181.4 188 47.9
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 1.4e-43 181.0 273 38.5
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 2.3e-43 180.3 282 37.2
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 1.9e-40 170.6 165 47.3
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 2.4e-40 170.2 311 32.5
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 1.6e-36 157.5 145 53.1
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 6.2e-36 155.6 132 58.3
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 1.1e-32 144.8 146 48.6
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 5.6e-29 132.5 124 49.2
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.2e-26 124.8 102 53.9
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 2.9e-25 120.2 174 40.2
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 3.8e-25 119.8 81 63.0
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 8.4e-25 118.6 81 60.5
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 9.2e-24 115.2 75 62.7
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 7.8e-23 112.1 75 62.7
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 3.5e-15 86.7 87 47.1
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 7.8e-15 85.5 138 39.9
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 8.1e-12 75.5 251 24.3
Ca_12392_v3 Cicer arietinum L. HOM05D000112 ORTHO05D023238 9.9e-10 68.6 74 51.4
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 4.9e-09 66.2 44 63.6
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 1.9e-08 64.3 43 62.8
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 1.3e-06 58.2 122 32.8
Hund19874 Selenicereus undatus HOM05D006689 ORTHO05D008349 1.8e-06 57.8 44 52.3


User provided reference genes

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