Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZI71EU Arachis hypogaea HOM05D007486 ORTHO05D003673 5.3e-41 170.6 89 100.0
Lalb_Chr20g0117691 Lupinus albus HOM05D007486 ORTHO05D003673 1.8e-17 92.4 62 72.6
Rhsim01G0250000 Rhododendron simsii HOM05D007486 ORTHO05D003673 2.4e-17 92.0 62 71.0
CSS0040920 Camellia sinensis var. sinensis HOM05D007486 ORTHO05D003673 4.1e-17 91.3 62 71.0
Glyma.13G220800 Glycine max HOM05D007486 ORTHO05D003673 5.4e-17 90.9 62 72.6
Glyma.15G091700 Glycine max HOM05D007486 ORTHO05D003673 5.4e-17 90.9 62 72.6
Manes.13G051900 Manihot esculenta HOM05D007486 ORTHO05D003673 5.4e-17 90.9 62 71.0
Potri.002G248100 Populus trichocarpa HOM05D007486 ORTHO05D003673 7.0e-17 90.5 60 71.7
Eucgr.H00752 Eucalyptus grandis HOM05D007486 ORTHO05D003673 9.1e-17 90.1 62 71.0
Lj3A22G11 Lonicera japonica HOM05D007486 ORTHO05D003673 9.1e-17 90.1 62 69.4
Dinv28833 Davidia involucrata HOM05D007486 ORTHO05D003673 1.2e-16 89.7 62 69.4
Lj2P1121T80 Lonicera japonica HOM05D007486 ORTHO05D003673 1.2e-16 89.7 62 69.4
ClCG09G011490 Citrullus lanatus HOM05D007486 ORTHO05D003673 2.0e-16 89.0 62 69.4
MELO3C022733.2 Cucumis melo HOM05D007486 ORTHO05D003673 2.0e-16 89.0 60 71.7
VMungo0540G1511 Vigna mungo HOM05D007486 ORTHO05D003673 2.7e-16 88.6 62 71.0
Psat1g191400 Pisum sativum HOM05D007486 ORTHO05D003673 3.5e-16 88.2 62 69.4
Sed0025116 Sechium edule HOM05D007486 ORTHO05D003673 4.5e-16 87.8 62 66.1
CiPaw.13G051500 Carya illinoinensis HOM05D007486 ORTHO05D003673 5.9e-16 87.4 60 73.3
Phvul.006G167600 Phaseolus vulgaris HOM05D007486 ORTHO05D003673 5.9e-16 87.4 62 69.4
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 7.7e-16 87.0 62 67.7
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 7.7e-16 87.0 62 67.7
CsaV3_3G030190 Cucumis sativus L. HOM05D007486 ORTHO05D003673 7.7e-16 87.0 60 70.0
Lj6g0012572 Lotus japonicus HOM05D007486 ORTHO05D003673 1.0e-15 86.7 62 69.4
AT3G25210 Arabidopsis thaliana HOM05D007486 ORTHO05D003673 1.3e-15 86.3 62 66.1
AL3G41110 Arabidopsis lyrata HOM05D007486 ORTHO05D003673 2.3e-15 85.5 62 66.1
Thecc.01G215400 Theobroma cacao HOM05D007486 ORTHO05D003673 2.3e-15 85.5 62 66.1
Duzib133G0357 Durio zibethinus HOM05D007486 ORTHO05D003673 2.9e-15 85.1 62 67.7
Sabra02G0188800 Salix brachista HOM05D007486 ORTHO05D003673 3.8e-15 84.7 60 65.0
Carub.0003s2558 Capsella rubella HOM05D007486 ORTHO05D003673 5.0e-15 84.3 62 64.5
SalBow3G3646 Salvia bowleyana HOM05D007486 ORTHO05D003673 5.0e-15 84.3 62 62.9
THA.LOC104804636 Tarenaya hassleriana HOM05D007486 ORTHO05D003673 6.6e-15 84.0 62 66.1
TWI18G0642 Tripterygium wilfordii HOM05D007486 ORTHO05D003673 6.6e-15 84.0 60 66.7
Gorai.001G103500 Gossypium raimondii HOM05D007486 ORTHO05D003673 8.6e-15 83.6 62 64.5
Aa31sc18G110 Aethionema arabicum HOM05D007486 ORTHO05D003673 1.1e-14 83.2 62 62.9
MSTRG.12763 Avicennia marina HOM05D007486 ORTHO05D003673 1.1e-14 83.2 62 62.9
BcaB06g26711 Brassica carinata HOM05D007486 ORTHO05D003673 1.1e-14 83.2 62 62.9
Cc01_g16440 Coffea canephora HOM05D007486 ORTHO05D003673 1.1e-14 83.2 64 64.1
Medtr2g018820 Medicago truncatula HOM05D007486 ORTHO05D003673 1.5e-14 82.8 62 67.7
Gohir.D07G096200 Gossypium hirsutum HOM05D007486 ORTHO05D003673 3.3e-14 81.6 62 62.9
CAN.G874.18 Capsicum annuum HOM05D007486 ORTHO05D003673 4.2e-14 81.3 62 61.3
Ciclev10031787m.g Citrus clementina HOM05D007486 ORTHO05D003673 4.2e-14 81.3 60 66.7
Thhalv10002564m.g Eutrema salsugineum HOM05D007486 ORTHO05D003673 4.2e-14 81.3 62 61.3
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 5.5e-14 80.9 62 62.9
Peaxi162Scf01312g00009 Petunia axillaris HOM05D003330 ORTHO05D003805 5.5e-14 80.9 62 61.3
TAR625G0208 Trochodendron aralioides HOM05D007486 ORTHO05D003673 5.5e-14 80.9 60 66.7
Sp3g22830 Schrenkiella parvula HOM05D007486 ORTHO05D003673 7.2e-14 80.5 62 61.3
Solyc06g083200.3 Solanum lycopersicum HOM05D007486 ORTHO05D003673 7.2e-14 80.5 62 61.3
Sopen06g034590 Solanum pennellii HOM05D007486 ORTHO05D003673 7.2e-14 80.5 62 61.3
Cfa016598 Carpinus fangiana HOM05D007486 ORTHO05D003673 9.5e-14 80.1 60 65.0
Haze_19599 Corylus avellana HOM05D007486 ORTHO05D003673 9.5e-14 80.1 60 65.0
Migut.N00643 Erythranthe guttata HOM05D007486 ORTHO05D003673 1.2e-13 79.7 60 63.3
MBI15_g18240_MAGBIO Magnolia biondii HOM05D007486 ORTHO05D003673 1.6e-13 79.3 60 63.3
PGR083G0899 Punica granatum HOM05D007486 ORTHO05D003673 1.6e-13 79.3 60 65.0
Nitab4.5_0003020g0090 Nicotiana tabacum HOM05D007486 ORTHO05D003673 2.1e-13 79.0 62 59.7
Nitab4.5_0019111g0010 Nicotiana tabacum HOM05D007486 ORTHO05D003673 2.1e-13 79.0 62 59.7
BcaC06g35800 Brassica carinata HOM05D007486 ORTHO05D003673 2.8e-13 78.6 63 61.9
C07p10710 Brassica napus HOM05D007486 ORTHO05D003673 2.8e-13 78.6 63 61.9
BolC7t41537H Brassica oleracea HOM05D007486 ORTHO05D003673 2.8e-13 78.6 63 61.9
BraA07t28496Z Brassica rapa HOM05D007486 ORTHO05D003673 2.8e-13 78.6 63 61.9
Aqoxy7G03388 Aquilegia oxysepala HOM05D007486 ORTHO05D003673 1.0e-12 76.6 66 59.1
DCAR_008418 Daucus carota HOM05D007486 ORTHO05D003673 1.0e-12 76.6 62 56.5
FvH4_3g25580 Fragaria vesca HOM05D007486 ORTHO05D003673 1.0e-12 76.6 60 65.0
FAN11G1759 Fragaria x ananassa HOM05D007486 ORTHO05D003673 1.0e-12 76.6 60 65.0
Oeu003624.1 Olea europaea HOM05D007486 ORTHO05D003673 1.0e-12 76.6 60 61.7
RcHm_v2.0_Chr5g0046411 Rosa chinensis HOM05D007486 ORTHO05D003673 1.0e-12 76.6 60 63.3
Lsat_1_v5_gn_8_89041 Lactuca sativa HOM05D007486 ORTHO05D003673 1.4e-12 76.3 62 59.7
Atru.chr6.1455 Acer truncatum HOM05D007486 ORTHO05D003673 1.8e-12 75.9 60 61.7
GSVIVG01009330001 Vitis vinifera HOM05D007486 ORTHO05D003673 1.8e-12 75.9 53 66.0
A07p07090 Brassica napus HOM05D007486 ORTHO05D003673 3.0e-12 75.1 63 58.7
FAN16G1502 Fragaria x ananassa HOM05D007486 ORTHO05D003673 4.0e-12 74.7 60 63.3
Prupe.8G194300 Prunus persica HOM05D007486 ORTHO05D003673 5.2e-12 74.3 60 60.0
MD10G1156500 Malus domestica HOM05D007486 ORTHO05D003673 6.8e-12 73.9 60 60.0
QL09p049342 Quercus lobata HOM05D007486 ORTHO05D003673 6.8e-12 73.9 60 60.0
AUR62022161 Chenopodium quinoa HOM05D007486 ORTHO05D003673 8.9e-12 73.6 62 59.7
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 8.9e-12 73.6 76 52.6
FAN21G3323 Fragaria x ananassa HOM05D007486 ORTHO05D003673 1.2e-11 73.2 60 61.7
PSO017G6569 Papaver somniferum HOM05D007486 ORTHO05D003673 1.5e-11 72.8 60 55.0
FAN25G2586 Fragaria x ananassa HOM05D007486 ORTHO05D003673 4.4e-11 71.2 60 60.0
HanXRQChr06g0172221 Helianthus annuus HOM05D007486 ORTHO05D003673 5.7e-11 70.9 60 60.0
CDE08G0620 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 7.5e-11 70.5 60 55.0
EL10Ac7g17952 Beta vulgaris HOM05D007486 ORTHO05D003673 3.7e-10 68.2 62 56.5
Sc17g0001920 Simmondsia chinensis HOM05D007486 ORTHO05D003673 4.9e-10 67.8 60 56.7
PGSC0003DMG402020106 Solanum tuberosum HOM05D007486 ORTHO05D003673 4.9e-10 67.8 50 64.0
AUR62001160 Chenopodium quinoa HOM05D007486 ORTHO05D003673 1.6e-08 62.8 45 64.4
ATR0665G439 Amborella trichopoda HOM05D007486 ORTHO05D003673 1.1e-06 56.6 55 45.5
SHI02273 Sapria himalayana HOM05D007486 ORTHO05D003673 1.5e-06 56.2 58 44.8


User provided reference genes

Program Settings