Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZHN7Y2 Arachis hypogaea HOM05D000275 ORTHO05D000181 2.3e-38 161.8 82 100.0
arahy.Tifrunner.gnm1.ann1.EB1W4P Arachis hypogaea HOM05D000275 ORTHO05D000181 1.1e-19 99.8 57 84.2
arahy.Tifrunner.gnm1.ann1.JFR3PY Arachis hypogaea HOM05D000275 ORTHO05D000181 1.3e-14 82.8 45 88.9
TPR.G17317 Trifolium pratense HOM05D000275 ORTHO05D000181 1.5e-13 79.3 56 73.2
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 1.5e-13 79.3 57 70.2
Lj3g0025801 Lotus japonicus HOM05D000275 ORTHO05D000181 3.3e-13 78.2 57 70.2
CANSAT11G2344 Cannabis sativa HOM05D000275 ORTHO05D000181 4.3e-13 77.8 55 69.1
Lj3g0012102 Lotus japonicus HOM05D000275 ORTHO05D000181 4.3e-13 77.8 57 70.2
Lalb_Chr20g0108251 Lupinus albus HOM05D000275 ORTHO05D000181 7.4e-13 77.0 57 66.7
Glyma.15G265900 Glycine max HOM05D000275 ORTHO05D000181 1.6e-12 75.9 56 69.6
Medtr2g062600 Medicago truncatula HOM05D000275 ORTHO05D000181 1.6e-12 75.9 56 69.6
Glyma.08G161700 Glycine max HOM05D000275 ORTHO05D000181 2.1e-12 75.5 56 69.6
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 3.7e-12 74.7 57 64.9
Ciclev10033098m.g Citrus clementina HOM05D000275 ORTHO05D000181 6.2e-12 73.9 54 68.5
Prupe.2G000900 Prunus persica HOM05D000275 ORTHO05D000181 6.2e-12 73.9 56 66.1
Potri.001G232700 Populus trichocarpa HOM05D000275 ORTHO05D000181 8.2e-12 73.6 54 66.7
Ca_03265_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 1.1e-11 73.2 57 61.4
DCAR_015724 Daucus carota HOM05D000275 ORTHO05D000181 1.1e-11 73.2 55 61.8
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 1.1e-11 73.2 54 66.7
Aa31LG8G15660 Aethionema arabicum HOM05D000275 ORTHO05D000181 1.4e-11 72.8 54 66.7
Potri.001G232900 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.8e-11 72.4 54 64.8
Atru.chr11.2720 Acer truncatum HOM05D000275 ORTHO05D000181 2.4e-11 72.0 54 63.0
Psat1g130320 Pisum sativum HOM05D000275 ORTHO05D000181 2.4e-11 72.0 57 59.6
CsaV3_7G031570 Cucumis sativus L. HOM05D000275 ORTHO05D000181 5.3e-11 70.9 54 66.7
ClCG09G003610 Citrullus lanatus HOM05D000275 ORTHO05D000181 6.9e-11 70.5 57 63.2
MELO3C023497.2 Cucumis melo HOM05D000275 ORTHO05D000181 6.9e-11 70.5 54 66.7
Haze_03292 Corylus avellana HOM05D000275 ORTHO05D000181 9.0e-11 70.1 55 63.6
Cfa010681 Carpinus fangiana HOM05D000275 ORTHO05D000181 1.5e-10 69.3 55 61.8
AL3G51640 Arabidopsis lyrata HOM05D000275 ORTHO05D000181 2.0e-10 68.9 75 52.0
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 2.0e-10 68.9 56 57.1
MD00G1187200 Malus domestica HOM05D000275 ORTHO05D000181 2.0e-10 68.9 53 64.2
PGR042G3528 Punica granatum HOM05D000275 ORTHO05D000181 2.6e-10 68.6 81 50.6
Hma1.2p1_0128F.1_g059960 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 3.4e-10 68.2 55 60.0
Potri.009G025200 Populus trichocarpa HOM05D000275 ORTHO05D000181 3.4e-10 68.2 55 60.0
Sabra09G0016700 Salix brachista HOM05D000275 ORTHO05D000181 3.4e-10 68.2 55 60.0
CSS0001255 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 4.5e-10 67.8 48 62.5
Thhalv10022915m.g Eutrema salsugineum HOM05D000275 ORTHO05D000181 4.5e-10 67.8 54 63.0
TAR623G0763 Trochodendron aralioides HOM05D000275 ORTHO05D000181 4.5e-10 67.8 57 56.1
AT2G18370 Arabidopsis thaliana HOM05D000275 ORTHO05D000181 5.8e-10 67.4 65 53.8
MSTRG.28109 Avicennia marina HOM05D000275 ORTHO05D000181 5.8e-10 67.4 55 56.4
Dinv43951 Davidia involucrata HOM05D000275 ORTHO05D000181 5.8e-10 67.4 55 56.4
Eucgr.H04731 Eucalyptus grandis HOM05D000275 ORTHO05D000181 5.8e-10 67.4 81 49.4
COL.COLO4_17112 Corchorus olitorius HOM05D000275 ORTHO05D000181 7.6e-10 67.0 55 60.0
Actinidia31722 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.3e-09 66.2 54 55.6
Cpa.g.sc228.23 Carica papaya HOM05D000275 ORTHO05D000181 1.3e-09 66.2 56 60.7
CiPaw.15G186600 Carya illinoinensis HOM05D000275 ORTHO05D000181 1.3e-09 66.2 55 58.2
Lsat_1_v5_gn_1_89881 Lactuca sativa HOM05D000275 ORTHO05D000181 1.3e-09 66.2 57 61.4
BcaB07g31671 Brassica carinata HOM05D000275 ORTHO05D000181 1.7e-09 65.9 54 61.1
CARHR108960 Cardamine hirsuta HOM05D000275 ORTHO05D000181 1.7e-09 65.9 75 50.7
Sp3g31780 Schrenkiella parvula HOM05D000275 ORTHO05D000181 1.7e-09 65.9 54 61.1
SpUn0030_0050 Schrenkiella parvula HOM05D000275 ORTHO05D000181 1.7e-09 65.9 54 61.1
Carub.0003s3252 Capsella rubella HOM05D000275 ORTHO05D000181 2.9e-09 65.1 65 52.3
Rhsim07G0048700 Rhododendron simsii HOM05D000275 ORTHO05D000181 2.9e-09 65.1 57 49.1
BcaC04g22908 Brassica carinata HOM05D000275 ORTHO05D000181 3.8e-09 64.7 54 59.3
C09p13960 Brassica napus HOM05D000275 ORTHO05D000181 3.8e-09 64.7 54 59.3
BolC9t54291H Brassica oleracea HOM05D000275 ORTHO05D000181 3.8e-09 64.7 54 59.3
Nn7g35873 Nelumbo nucifera HOM05D000275 ORTHO05D000181 6.5e-09 63.9 55 58.2
A09p11880 Brassica napus HOM05D000275 ORTHO05D000181 8.4e-09 63.5 54 57.4
BraA09t36833Z Brassica rapa HOM05D000275 ORTHO05D000181 8.4e-09 63.5 54 57.4
Gorai.008G229100 Gossypium raimondii HOM05D000275 ORTHO05D000181 8.4e-09 63.5 55 58.2
SGA_v2.0_scaffold95G28758 Striga asiatica HOM05D000275 ORTHO05D000181 8.4e-09 63.5 57 50.9
vmacro22473 Vaccinium macrocarpon HOM05D000275 ORTHO05D000181 1.4e-08 62.8 48 52.1
MSTRG.4993 Avicennia marina HOM05D000275 ORTHO05D000181 1.9e-08 62.4 55 49.1
Gohir.D12G213500 Gossypium hirsutum HOM05D000275 ORTHO05D000181 3.2e-08 61.6 55 56.4
Sed0020486 Sechium edule HOM05D000275 ORTHO05D000181 3.2e-08 61.6 55 58.2
HanXRQChr01g0018461 Helianthus annuus HOM05D000275 ORTHO05D000181 4.2e-08 61.2 57 56.1
Oeu024945.1 Olea europaea HOM05D000275 ORTHO05D000181 5.5e-08 60.8 48 54.2
Peaxi162Scf01343g00142 Petunia axillaris HOM05D000275 ORTHO05D000181 5.5e-08 60.8 55 50.9
Manes.09G117300 Manihot esculenta HOM05D000275 ORTHO05D000181 6.1e-07 57.4 48 52.1
Sed0001629 Sechium edule HOM05D000275 ORTHO05D000181 6.1e-07 57.4 54 50.0
Solyc01g081600.3 Solanum lycopersicum HOM05D000275 ORTHO05D000181 1.0e-06 56.6 57 45.6
Sopen01g033150 Solanum pennellii HOM05D000275 ORTHO05D000181 1.0e-06 56.6 57 45.6
unitig_27.g24888 Utricularia gibba HOM05D000275 ORTHO05D000181 1.0e-06 56.6 55 43.6
EL10Ac9g21665 Beta vulgaris HOM05D000275 ORTHO05D000181 1.3e-06 56.2 56 48.2
HanXRQChr15g0463581 Helianthus annuus HOM05D000275 ORTHO05D000181 1.8e-06 55.8 57 47.4
SalBow4G2860 Salvia bowleyana HOM05D000275 ORTHO05D000181 1.8e-06 55.8 48 50.0
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 1.8e-06 55.8 48 50.0
PGSC0003DMG400031127 Solanum tuberosum HOM05D000275 ORTHO05D000181 1.8e-06 55.8 55 49.1
Peaxi162Scf00402g00945 Petunia axillaris HOM05D000275 ORTHO05D020304 2.3e-06 55.5 55 47.3
EL10Ac7g17082 Beta vulgaris HOM05D000275 ORTHO05D000181 3.9e-06 54.7 48 50.0
Gohir.D08G068000 Gossypium hirsutum HOM05D000275 ORTHO05D000181 3.9e-06 54.7 60 45.0
SEGI_30007 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 3.9e-06 54.7 53 47.2
unitig_699.g19590 Utricularia gibba HOM05D000275 ORTHO05D000181 3.9e-06 54.7 52 44.2
Gorai.004G071100 Gossypium raimondii HOM05D000275 ORTHO05D000181 5.1e-06 54.3 60 43.3
HanXRQChr15g0463521 Helianthus annuus HOM05D000275 ORTHO05D000181 5.1e-06 54.3 57 49.1
Eucgr.A00744 Eucalyptus grandis HOM05D000275 ORTHO05D000181 6.7e-06 53.9 52 50.0
SGA_v2.0_scaffold52G19223 Striga asiatica HOM05D000275 ORTHO05D000181 6.7e-06 53.9 48 43.8


User provided reference genes

Program Settings