Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 9.1e-162 573.5 297 100.0
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 8.0e-150 533.9 326 88.0
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 3.3e-71 272.7 276 60.5
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 3.8e-67 259.2 284 57.4
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 1.1e-66 257.7 280 56.1
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 2.1e-65 253.4 266 58.3
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 1.8e-64 250.4 286 57.0
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 2.6e-60 236.5 253 59.3
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 1.3e-46 191.0 207 57.0
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 1.3e-46 191.0 225 55.1
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 9.4e-42 174.9 250 48.8
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 3.0e-40 169.9 289 43.6
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 5.2e-40 169.1 202 53.0
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 8.8e-40 168.3 251 47.8
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 1.2e-39 167.9 251 44.2
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 7.0e-37 158.7 284 43.7
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 3.5e-36 156.4 242 48.8
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 4.5e-36 156.0 165 57.0
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 5.9e-36 155.6 230 49.1
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.0e-35 154.8 259 44.8
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 1.0e-35 154.8 287 42.2
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 1.3e-35 154.5 254 43.7
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 1.7e-35 154.1 279 43.0
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 1.7e-35 154.1 255 45.5
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 2.9e-35 153.3 290 39.0
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.9e-35 153.3 230 48.3
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 1.1e-34 151.4 288 44.8
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 1.1e-34 151.4 288 42.4
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.5e-34 151.0 230 47.8
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 1.5e-34 151.0 254 44.5
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.9e-34 150.6 255 44.3
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.9e-34 150.6 255 45.1
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 2.5e-34 150.2 290 42.4
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 2.5e-34 150.2 267 40.8
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.5e-34 150.2 267 40.8
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 3.2e-34 149.8 267 40.8
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 4.2e-34 149.4 253 43.5
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 5.5e-34 149.1 282 41.8
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.2e-33 147.9 234 48.7
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 2.7e-33 146.7 314 38.2
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 3.6e-33 146.4 234 48.3
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 6.1e-33 145.6 273 42.1
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 6.1e-33 145.6 255 43.9
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.0e-32 144.8 288 39.2
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 1.8e-32 144.1 260 45.0
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.3e-32 143.7 299 42.1
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 2.3e-32 143.7 216 47.2
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 4.0e-32 142.9 267 41.2
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 4.0e-32 142.9 280 41.1
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 4.0e-32 142.9 285 40.7
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 8.8e-32 141.7 287 39.0
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 4.4e-31 139.4 273 40.7
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 9.8e-31 138.3 287 39.7
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 4.8e-30 136.0 158 58.2
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 6.3e-30 135.6 221 43.9
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 6.3e-30 135.6 307 40.1
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 1.1e-29 134.8 243 43.2
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 7.0e-29 132.1 219 43.8
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 9.1e-29 131.7 232 42.2
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 1.2e-28 131.3 176 50.6
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 1.2e-28 131.3 161 54.0
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 1.6e-28 131.0 240 43.3
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 2.0e-28 130.6 295 39.3
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 2.7e-28 130.2 135 60.0
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 2.7e-28 130.2 238 45.0
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 3.5e-28 129.8 195 47.7
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 5.9e-28 129.0 151 53.6
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 2.3e-27 127.1 156 52.6
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 5.0e-27 125.9 305 37.7
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 6.6e-27 125.6 193 46.6
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 1.9e-26 124.0 299 38.5
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 1.9e-26 124.0 299 38.5
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 1.9e-26 124.0 187 47.6
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 3.3e-26 123.2 164 53.7
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 4.2e-26 122.9 201 43.3
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 4.2e-26 122.9 263 39.2
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 7.2e-26 122.1 304 38.8
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 7.2e-26 122.1 304 38.8
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 7.2e-26 122.1 304 38.8
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 1.6e-25 120.9 173 50.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.6e-25 120.9 168 49.4
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 1.6e-25 120.9 276 38.4
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 2.8e-25 120.2 270 41.1
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 8.0e-25 118.6 325 35.4
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 1.4e-24 117.9 214 41.6
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 1.8e-24 117.5 266 39.1
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 4.0e-24 116.3 99 67.7
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 5.2e-24 115.9 81 77.8
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 5.2e-24 115.9 177 46.3
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.5e-23 114.4 137 56.2
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.5e-23 112.1 216 45.4
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 7.5e-23 112.1 158 48.7
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 7.5e-23 112.1 256 35.9
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 2.2e-22 110.5 133 55.6
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 2.2e-22 110.5 215 37.7
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 3.7e-22 109.8 197 41.6
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 4.9e-22 109.4 156 48.7
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 8.3e-22 108.6 221 41.2
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 4.1e-21 106.3 150 48.0
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 1.2e-20 104.8 158 46.2
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 1.6e-20 104.4 159 45.9
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 1.6e-20 104.4 286 32.2
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 1.7e-19 100.9 227 37.0
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 5.0e-19 99.4 123 52.0
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 5.0e-19 99.4 115 54.8
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 6.6e-19 99.0 154 50.6
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 8.6e-19 98.6 130 52.3
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 1.9e-18 97.4 277 35.0
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 4.3e-18 96.3 152 46.7
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 5.6e-18 95.9 242 36.4
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 1.2e-17 94.7 161 41.6
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.6e-17 94.4 150 44.0
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.1e-16 90.1 107 54.2
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 1.7e-14 84.3 170 38.8
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 2.2e-14 84.0 61 67.2
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 1.0e-11 75.1 103 48.5
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.0e-11 75.1 50 72.0
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 6.6e-11 72.4 121 40.5
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 1.1e-10 71.6 60 65.0


User provided reference genes

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