Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 4.3e-54 214.5 118 100.0
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 6.8e-44 180.6 118 88.1
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 4.6e-24 114.8 118 59.3
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.0e-23 113.6 118 58.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.9e-23 111.7 118 58.5
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 2.5e-22 109.0 118 57.6
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 4.3e-22 108.2 118 57.6
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.6e-21 106.3 118 56.8
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 3.6e-21 105.1 119 59.7
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.1e-20 103.6 118 56.8
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.8e-20 102.8 118 55.9
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.8e-20 102.8 118 56.8
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.8e-20 102.8 119 57.1
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 3.1e-20 102.1 118 55.9
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 4.0e-20 101.7 118 54.2
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.0e-20 101.7 118 55.1
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 5.3e-20 101.3 120 55.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 6.9e-20 100.9 118 56.8
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 9.0e-20 100.5 118 55.9
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.0e-19 99.4 120 55.0
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.0e-19 99.4 118 55.1
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 2.0e-19 99.4 118 58.5
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 7.6e-19 97.4 118 55.1
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 7.6e-19 97.4 119 55.5
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.3e-18 96.7 118 53.4
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 2.2e-18 95.9 112 60.7
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.2e-18 95.9 118 55.1
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.2e-18 95.9 119 54.6
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 2.2e-18 95.9 118 52.5
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 6.4e-18 94.4 118 52.5
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 8.4e-18 94.0 118 50.8
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 8.4e-18 94.0 118 52.5
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.1e-17 93.6 111 54.1
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.4e-17 93.2 118 52.5
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 2.4e-17 92.4 118 51.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.4e-17 92.4 109 55.0
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.2e-17 92.0 118 52.5
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.2e-17 92.0 118 52.5
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 5.4e-17 91.3 118 49.2
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 7.1e-17 90.9 118 52.5
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 9.3e-17 90.5 109 55.0
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 9.3e-17 90.5 118 49.2
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 9.3e-17 90.5 118 54.2
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.2e-16 90.1 109 54.1
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 2.7e-16 89.0 111 53.2
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 3.5e-16 88.6 121 46.3
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 6.0e-16 87.8 51 82.4
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 6.0e-16 87.8 111 50.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 6.0e-16 87.8 125 45.6
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 7.9e-16 87.4 118 50.0
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.0e-15 87.0 118 47.5
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.0e-15 87.0 121 45.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.3e-15 86.7 119 52.1
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 1.8e-15 86.3 122 49.2
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 46.6
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 47.5
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 2.3e-15 85.9 118 47.5
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.3e-15 85.9 48 89.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 2.3e-15 85.9 122 45.9
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 3.0e-15 85.5 118 47.5
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 3.0e-15 85.5 118 47.5
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 3.0e-15 85.5 131 45.8
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 3.9e-15 85.1 118 47.5
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 5.1e-15 84.7 118 45.8
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 5.1e-15 84.7 118 45.8
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 5.1e-15 84.7 118 45.8
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 5.1e-15 84.7 118 45.8
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 5.1e-15 84.7 118 45.8
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 5.1e-15 84.7 118 50.8
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 8.7e-15 84.0 109 51.4
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.1e-14 83.6 118 45.8
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.1e-14 83.6 109 51.4
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.1e-14 83.6 118 50.0
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-14 83.2 118 46.6
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.3e-14 82.0 112 50.9
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 4.3e-14 81.6 109 52.3
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 9.6e-14 80.5 118 48.3
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.3e-13 80.1 44 90.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.1e-13 79.3 122 45.1
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.7e-13 78.6 118 44.1
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 8.1e-13 77.4 47 78.7
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 8.1e-13 77.4 109 49.5
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.8e-12 76.3 103 49.5
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.8e-12 76.3 109 49.5
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 4.0e-12 75.1 109 49.5
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 6.9e-12 74.3 115 46.1
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.5e-11 73.2 50 78.0
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.5e-11 73.2 109 45.9
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.0e-11 72.8 113 46.9
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 2.0e-11 72.8 109 49.5
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.6e-11 72.4 109 47.7
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.4e-11 72.0 46 78.3
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 3.4e-11 72.0 111 45.9
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 4.5e-11 71.6 113 46.9
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 4.5e-11 71.6 118 43.2
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 4.5e-11 71.6 113 46.0
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 9.9e-11 70.5 118 44.1
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 1.7e-10 69.7 105 47.6
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.9e-10 68.9 109 45.0
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 6.4e-10 67.8 45 75.6
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 6.4e-10 67.8 45 75.6
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 6.4e-10 67.8 45 75.6
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 6.4e-10 67.8 109 42.2
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.1e-09 67.0 89 49.4
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 1.1e-09 67.0 118 43.2
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 1.9e-09 66.2 45 73.3
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.4e-09 65.9 45 73.3
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.4e-09 65.9 115 41.7
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 3.2e-09 65.5 76 53.9
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 4.2e-09 65.1 45 71.1
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 4.2e-09 65.1 45 71.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 4.2e-09 65.1 45 71.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 4.2e-09 65.1 45 71.1
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.2e-09 65.1 76 53.9
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.2e-09 65.1 76 53.9
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 5.5e-09 64.7 45 73.3
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 7.1e-09 64.3 113 41.6
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 9.3e-09 63.9 46 69.6
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.2e-08 63.5 48 64.6
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.2e-08 63.5 118 39.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.6e-08 63.2 47 70.2
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.6e-08 63.2 113 39.8
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.6e-08 63.2 48 64.6
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.6e-08 63.2 48 68.8
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.6e-08 63.2 44 68.2
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.6e-08 63.2 44 68.2
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.1e-08 62.8 44 68.2
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.1e-08 62.8 44 68.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.1e-08 62.8 115 39.1
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 3.5e-08 62.0 40 80.0
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.5e-08 62.0 118 39.8
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.5e-08 62.0 47 66.0
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 4.6e-08 61.6 48 66.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.0e-08 61.2 47 68.1
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.0e-08 61.2 47 68.1
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.0e-08 61.2 47 68.1
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 7.9e-08 60.8 44 68.2
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 7.9e-08 60.8 44 70.5
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 7.9e-08 60.8 46 67.4
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 1.3e-07 60.1 104 43.3
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.3e-07 59.3 38 78.9
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 2.3e-07 59.3 38 78.9
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.3e-07 59.3 39 76.9
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.3e-07 59.3 118 36.4
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.0e-07 58.9 43 72.1
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.0e-07 58.9 43 72.1
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 3.0e-07 58.9 44 65.9
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 3.0e-07 58.9 44 65.9
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 3.9e-07 58.5 37 81.1
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 3.9e-07 58.5 37 81.1
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 5.1e-07 58.2 109 43.1
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 5.1e-07 58.2 38 76.3
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 5.1e-07 58.2 39 76.9
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 5.1e-07 58.2 38 76.3
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 6.7e-07 57.8 71 47.9
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 6.7e-07 57.8 45 64.4
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 6.7e-07 57.8 45 64.4
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 8.7e-07 57.4 113 39.8
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 8.7e-07 57.4 118 39.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.1e-06 57.0 37 78.4
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 1.1e-06 57.0 37 78.4
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.1e-06 57.0 37 78.4
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.5e-06 56.6 45 62.2
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.9e-06 56.2 44 65.9
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.5e-06 55.8 87 42.5
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.5e-06 55.8 71 45.1
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 3.3e-06 55.5 36 75.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.3e-06 55.5 118 40.7
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 4.3e-06 55.1 45 60.0
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 4.3e-06 55.1 66 45.5
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 7.4e-06 54.3 107 42.1
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 7.4e-06 54.3 35 77.1
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 7.4e-06 54.3 40 72.5
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 9.6e-06 53.9 40 67.5
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 9.6e-06 53.9 95 44.2
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 9.6e-06 53.9 43 60.5


User provided reference genes

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