Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 6.9e-204 713.8 363 100.0
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.5e-150 536.6 324 85.2
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 3.1e-148 528.9 324 83.0
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 3.1e-148 528.9 324 83.0
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.3e-133 477.6 328 74.7
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.3e-133 477.6 328 74.7
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.1e-129 467.2 320 75.0
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 1.1e-127 460.7 321 72.9
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 2.6e-126 456.1 320 74.7
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-125 453.8 321 72.9
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-125 453.8 321 72.9
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-125 453.8 321 72.9
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-125 453.8 321 72.9
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.9e-125 451.8 321 72.0
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.9e-125 451.8 321 72.0
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 2.1e-123 446.4 322 72.4
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 2.1e-123 446.4 324 73.8
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 4.3e-121 438.7 323 70.6
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-120 434.9 322 70.5
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-120 434.9 322 70.5
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-120 434.9 322 70.5
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-120 434.9 322 70.5
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 2.3e-119 433.0 324 69.8
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 8.9e-119 431.0 322 69.9
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 1.1e-116 424.1 331 69.2
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 1.1e-116 424.1 331 69.2
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-116 423.3 331 69.2
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-116 423.3 331 69.2
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-116 423.3 331 69.2
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-116 423.3 331 69.2
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-116 423.3 331 69.2
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 4.1e-116 422.2 331 68.6
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 4.1e-116 422.2 331 68.9
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 4.1e-116 422.2 331 68.9
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 4.1e-116 422.2 331 68.9
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 4.1e-116 422.2 331 68.9
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 7.1e-116 421.4 321 69.2
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-115 420.6 329 69.0
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-115 420.2 282 74.8
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.7e-114 416.8 331 68.9
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 2.3e-114 416.4 321 68.5
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.1e-112 409.8 328 66.5
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 5.2e-111 405.2 334 66.2
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.0e-110 403.3 289 72.3
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 3.0e-106 389.4 297 69.4
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 6.9e-103 378.3 275 74.5
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 9.9e-102 374.4 271 72.7
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 3.2e-100 369.4 321 63.2
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 7.1e-100 368.2 304 66.8
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-92 342.0 321 58.6
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 2.1e-91 340.1 322 59.3
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 2.8e-88 329.7 277 61.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 8.4e-85 318.2 248 67.7
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 7.1e-84 315.1 277 61.0
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.3e-80 304.3 314 56.4
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.1e-76 288.5 172 87.8
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.2e-75 287.7 276 55.4
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.2e-75 287.7 276 55.4
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.2e-75 287.7 276 55.4
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.2e-75 287.7 276 55.4
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.2e-75 287.7 276 55.4
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 2.3e-74 283.5 223 69.5
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.6e-72 277.3 282 53.9
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 2.6e-70 270.0 174 78.7
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.2e-67 261.2 320 46.2
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 2.7e-67 260.0 232 62.1
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 6.7e-66 255.4 234 59.0
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.3e-65 253.1 266 53.8
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-64 249.2 185 69.7
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 3.1e-63 246.5 188 68.1
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 1.7e-61 240.7 201 69.7
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 8.5e-61 238.4 176 72.2
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 1.1e-60 238.0 181 68.0
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.8e-58 230.7 174 69.5
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 3.0e-58 229.9 175 68.6
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 3.0e-58 229.9 175 68.6
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 1.4e-55 221.1 135 79.3
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 9.1e-55 218.4 143 78.3
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.5e-54 217.6 216 60.2
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 9.4e-52 208.4 185 63.8
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 4.7e-51 206.1 178 65.7
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 1.8e-50 204.1 291 39.2
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.3e-50 203.8 108 85.2
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.1e-47 193.4 161 66.5
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.1e-47 193.0 105 84.8
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 9.1e-47 191.8 307 36.5
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 4.5e-46 189.5 142 67.6
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.0e-45 188.3 176 58.5
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-45 187.2 105 82.9
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 7.2e-44 182.2 180 54.4
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 2.7e-43 180.3 276 42.0
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.7e-43 179.5 125 68.8
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 6.1e-43 179.1 144 68.1
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.4e-42 177.9 118 72.9
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.5e-41 174.5 91 85.7
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.5e-41 174.5 91 85.7
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 3.1e-39 166.8 128 69.5
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-38 164.9 211 46.4
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.0e-37 161.8 211 45.5
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-37 159.5 184 50.5
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 8.5e-37 158.7 280 41.4
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 5.5e-36 156.0 115 73.9
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.0e-35 152.1 80 82.5
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 1.8e-34 151.0 147 59.2
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.3e-34 150.6 80 81.2
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 2.0e-33 147.5 253 43.5
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.4e-31 141.4 71 88.7
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 5.4e-31 139.4 81 80.2
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.7e-30 137.1 74 78.4
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 5.9e-30 136.0 81 77.8
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.7e-30 135.6 102 64.7
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 1.7e-29 134.4 95 71.6
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.3e-29 134.0 77 83.1
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 5.0e-29 132.9 102 63.7
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 6.6e-29 132.5 88 76.1
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.5e-28 131.3 94 79.8
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 2.5e-28 130.6 110 67.3
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.0e-27 125.6 153 49.7
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 1.2e-25 121.7 102 66.7
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.7e-24 117.9 67 82.1
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 2.8e-24 117.1 81 65.4
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-22 111.7 97 63.9
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-22 110.9 63 76.2
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 1.1e-20 105.1 65 83.1
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 4.3e-20 103.2 96 60.4
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.3e-20 103.2 65 83.1
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 5.6e-20 102.8 93 62.4
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 6.1e-19 99.4 45 93.3
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.1e-18 97.1 57 77.2
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.0e-18 96.7 61 75.4
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.2e-18 96.3 82 65.9
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.3e-16 91.7 87 57.5
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 7.0e-15 85.9 51 76.5
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 9.2e-15 85.5 93 57.0
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-13 82.0 53 64.2
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 6.6e-13 79.3 94 54.3
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.1e-10 70.5 61 67.2
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.7e-08 64.7 53 60.4
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.9e-08 63.9 43 79.1
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.9e-08 63.9 40 77.5


User provided reference genes

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