Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1770.4 887 100.0
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1708.3 909 95.7
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1251.9 857 74.2
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1251.5 857 73.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 0.0e+00 1230.3 863 72.9
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1223.8 858 72.8
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 0.0e+00 1219.1 858 71.1
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 0.0e+00 1172.9 858 70.3
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 0.0e+00 1165.2 851 70.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1112.4 858 67.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.0e-309 1065.1 859 64.3
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.4e-303 1045.4 848 65.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.6e-300 1034.2 850 64.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.1e-269 931.4 865 56.9
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 6.3e-267 924.5 863 56.3
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.5e-265 919.8 864 56.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 7.7e-265 917.5 863 55.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 7.4e-260 901.0 863 56.1
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.3e-256 890.2 858 55.4
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-256 889.8 861 54.5
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 9.4e-255 884.0 885 54.1
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 3.0e-253 879.0 861 53.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.7e-251 873.2 856 53.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.8e-251 872.5 864 53.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.8e-251 871.7 855 53.3
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.3e-250 868.2 885 52.9
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 9.1e-250 867.5 895 52.8
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.5e-249 865.1 865 53.4
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 5.9e-249 864.8 885 52.9
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.8e-248 862.1 886 53.2
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.8e-248 862.1 885 52.8
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.0e-248 861.7 862 53.8
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.0e-248 861.7 855 54.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 8.5e-248 860.9 863 53.3
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 8.8e-245 850.9 867 51.9
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 7.0e-242 841.3 887 51.2
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 3.8e-240 835.5 920 49.6
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.0e-240 835.1 864 52.0
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.5e-239 832.8 864 51.9
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 4.0e-237 825.5 748 57.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.2e-236 823.9 884 50.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 9.8e-236 820.8 869 50.3
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 6.3e-235 818.1 941 49.1
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 9.1e-234 814.3 864 51.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.6e-233 813.5 859 51.1
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 2.7e-233 812.8 867 51.2
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 7.7e-233 811.2 864 50.7
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 6.6e-232 808.1 901 49.3
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.9e-231 806.6 858 52.2
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.8e-230 802.7 818 52.0
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 8.9e-229 797.7 864 48.7
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.4e-228 795.8 744 56.9
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 4.9e-227 792.0 867 48.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.9e-225 785.0 881 48.9
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.0e-224 784.3 857 50.5
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.3e-224 783.9 862 49.0
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 6.6e-224 781.6 862 49.0
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 7.3e-223 778.1 863 48.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 4.7e-222 775.4 860 50.1
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.8e-221 773.5 949 46.3
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 5.0e-216 755.4 870 48.3
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.7e-214 748.8 869 48.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.9e-211 739.6 883 45.6
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 8.3e-211 738.0 861 46.6
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.4e-210 737.3 886 45.9
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.7e-209 733.0 866 46.7
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 7.8e-209 731.5 892 46.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 8.9e-205 718.0 707 53.6
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 8.9e-205 718.0 860 46.6
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.0e-204 716.8 861 46.0
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 9.9e-204 714.5 865 46.1
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 2.9e-203 713.0 886 46.3
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 6.0e-201 705.3 696 52.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 9.6e-199 698.0 911 44.1
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.6e-198 697.2 869 45.2
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 3.6e-198 696.0 868 45.5
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.4e-194 684.1 932 42.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 5.4e-194 682.2 872 45.1
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.6e-193 680.6 872 45.4
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.3e-192 677.6 872 45.0
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.3e-192 677.6 652 55.8
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.3e-192 676.8 872 45.3
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 2.3e-192 676.8 861 44.6
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 3.9e-192 676.0 872 44.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 8.7e-192 674.9 872 44.7
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.5e-191 674.1 858 45.0
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 8.1e-190 668.3 693 50.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.1e-189 667.9 865 44.5
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 3.1e-189 666.4 934 43.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.4e-186 657.5 703 49.2
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.7e-184 650.6 867 43.1
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.0e-184 649.8 803 46.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 4.3e-183 646.0 872 44.5
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.3e-183 645.2 861 44.7
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.7e-177 626.7 814 44.3
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.9e-177 625.2 861 42.5
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.9e-175 620.5 709 48.1
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 7.4e-175 618.6 863 42.6
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 5.5e-170 602.4 666 48.9
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 9.3e-170 601.7 680 48.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 5.0e-163 579.3 867 39.9
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.3e-160 570.5 636 48.4
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 4.6e-153 546.2 887 38.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.4e-144 518.1 696 43.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.0e-144 516.9 678 44.2
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.6e-135 487.3 883 37.4
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 2.5e-130 470.7 555 48.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 5.5e-130 469.5 788 38.6
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.4e-125 454.1 763 38.0
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.2e-124 451.8 624 41.0
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 7.7e-124 449.1 730 37.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 5.5e-122 443.0 885 34.7
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.4e-112 411.8 688 36.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.6e-111 407.5 525 43.0
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 7.0e-101 372.9 339 60.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 2.7e-100 370.9 752 34.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.3e-98 364.0 261 69.3
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.2e-96 356.7 959 29.7
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.2e-96 356.7 959 29.7
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 5.1e-91 340.1 240 70.8
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.9e-88 329.3 289 60.9
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.5e-82 312.0 192 82.3
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.3e-82 310.5 957 27.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.6e-79 301.2 242 64.5
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.8e-78 297.4 585 34.4
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 8.7e-75 286.2 573 33.0
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 6.2e-73 280.0 192 71.9
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 4.0e-72 277.3 199 66.8
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 9.0e-72 276.2 711 30.7
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 4.2e-69 267.3 511 33.1
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 3.9e-67 260.8 191 68.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 5.3e-56 223.8 355 37.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.6e-52 212.2 742 27.0
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.8e-49 200.7 322 37.3
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.4e-48 199.1 138 71.7
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.1e-48 198.0 260 45.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.9e-46 191.4 225 44.9
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.5e-42 178.3 191 50.8
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 3.7e-41 174.5 145 61.4
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 7.7e-39 166.8 193 48.2
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.5e-38 163.3 205 42.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.4e-37 162.5 163 54.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 9.4e-37 159.8 108 70.4
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 3.7e-33 147.9 168 46.4
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 3.7e-33 147.9 94 74.5
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 6.3e-33 147.1 90 77.8
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.5e-31 142.5 194 41.2
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 4.5e-31 141.0 197 40.6
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.9e-30 138.3 102 73.5
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.5e-30 137.1 265 32.8
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-29 136.0 187 41.2
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.6e-28 131.3 182 41.2
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.0e-27 129.8 84 79.8
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.8e-24 119.0 188 36.2
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.1e-21 109.8 103 57.3
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 4.7e-20 104.4 169 36.7
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.1e-20 104.0 110 46.4
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 8.8e-19 100.1 181 34.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.6e-18 98.6 170 33.5
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.6e-15 89.4 171 39.2
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.1e-13 83.2 50 82.0
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 7.0e-08 63.9 107 33.6
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.5e-06 57.4 179 26.8


User provided reference genes

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