Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 6.7e-204 713.8 351 100.0
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.4e-191 670.2 405 84.4
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.1e-190 667.2 405 84.0
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 5.1e-180 634.4 405 81.0
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 2.6e-147 525.8 405 68.6
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 3.4e-147 525.4 401 70.3
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.2e-139 500.4 402 66.9
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 4.4e-139 498.4 402 66.2
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 9.8e-139 497.3 405 67.2
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.4e-137 492.7 401 67.3
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 7.0e-137 491.1 404 66.1
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.5e-126 456.1 366 65.8
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 2.8e-125 452.6 400 62.0
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.8e-124 449.9 400 61.2
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.6e-123 446.0 399 60.7
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 7.5e-123 444.5 404 60.6
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.7e-122 442.2 408 59.6
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 8.3e-122 441.0 412 60.0
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.7e-120 436.0 370 61.9
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.7e-120 436.0 410 59.5
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 4.6e-120 435.3 349 65.3
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 6.0e-120 434.9 397 60.7
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 1.0e-119 434.1 410 59.3
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-119 433.7 405 59.8
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 2.3e-119 433.0 397 60.2
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 2.5e-118 429.5 397 60.5
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 7.3e-118 427.9 380 60.8
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.1e-117 426.4 396 60.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.1e-117 426.4 402 59.0
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.1e-116 424.1 398 58.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.8e-116 423.3 365 60.8
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.3e-116 422.9 415 57.3
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 3.1e-116 422.5 328 66.2
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.2e-115 420.6 323 66.3
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 2.9e-114 416.0 384 58.6
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.7e-114 415.6 326 64.1
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 6.4e-114 414.8 414 57.5
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 6.4e-114 414.8 419 54.9
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 8.3e-114 414.5 409 57.2
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.9e-113 413.3 324 65.4
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 7.1e-113 411.4 343 63.6
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 9.2e-113 411.0 335 65.1
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-112 410.6 324 65.4
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 2.3e-111 406.4 339 63.4
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.9e-110 403.3 251 82.1
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.9e-110 403.3 322 64.3
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.9e-110 403.3 333 64.0
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 7.3e-110 401.4 377 59.2
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.2e-109 400.6 405 54.6
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.8e-109 399.4 368 55.7
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 2.8e-109 399.4 400 54.8
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 3.6e-109 399.1 387 56.3
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.6e-109 399.1 333 61.0
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 4.7e-109 398.7 396 55.6
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.5e-107 393.7 359 58.8
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.6e-107 392.9 296 66.2
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 3.4e-107 392.5 378 56.9
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 4.4e-107 392.1 413 54.7
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.2e-106 389.8 374 57.2
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 6.4e-106 388.3 408 53.7
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 8.4e-106 387.9 408 55.1
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.1e-105 387.5 374 57.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.4e-105 387.1 331 59.5
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.9e-105 386.7 329 62.0
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 2.4e-105 386.3 411 54.5
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 3.2e-105 386.0 393 57.5
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 5.4e-105 385.2 406 54.7
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 5.4e-105 385.2 290 69.3
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.6e-104 382.1 387 56.3
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 7.8e-104 381.3 315 62.9
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.3e-103 380.6 405 53.8
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.7e-103 380.2 407 53.8
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.1e-102 377.5 422 52.1
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-102 376.7 407 52.8
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.3e-102 375.9 328 60.1
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 5.6e-102 375.2 402 52.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 5.6e-102 375.2 331 59.8
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 9.6e-102 374.4 400 53.0
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 9.6e-102 374.4 410 53.4
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.8e-101 372.9 405 52.8
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.4e-100 369.8 390 54.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 2.4e-100 369.8 400 52.5
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.6e-99 366.3 382 53.4
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 7.6e-99 364.8 416 50.5
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 9.9e-99 364.4 306 60.8
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.2e-97 359.0 373 52.5
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 6.0e-96 355.1 328 57.0
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.3e-93 347.4 381 52.5
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 2.1e-93 346.7 258 68.6
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 4.8e-93 345.5 332 56.9
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 4.8e-93 345.5 400 49.0
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 6.9e-92 341.7 308 57.8
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 9.0e-92 341.3 352 56.8
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.5e-91 340.5 293 56.7
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 2.6e-91 339.7 383 50.4
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 2.2e-90 336.7 338 56.2
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 6.4e-90 335.1 291 56.4
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-89 333.2 322 58.4
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-89 333.2 322 58.4
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.4e-89 333.2 322 58.4
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 9.3e-89 331.3 295 56.3
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.6e-88 330.5 376 53.2
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.3e-87 326.6 295 56.9
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 8.7e-87 324.7 398 48.2
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 4.8e-85 318.9 331 53.2
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 4.0e-84 315.8 274 58.0
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.2e-83 314.3 243 65.8
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.5e-83 313.9 245 65.7
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.6e-83 313.2 325 50.8
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-82 310.5 335 49.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.9e-82 308.9 251 65.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.5e-81 306.6 325 50.2
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 4.2e-81 305.8 376 50.8
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 4.2e-81 305.8 311 54.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.9e-78 297.0 235 65.5
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-77 294.3 335 47.8
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 2.8e-77 293.1 247 63.2
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.1e-76 289.7 413 45.5
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.1e-76 289.7 250 63.2
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 5.8e-75 285.4 251 64.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 8.4e-74 281.6 319 54.9
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 8.4e-74 281.6 329 51.7
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 3.2e-73 279.6 290 54.8
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.2e-72 277.7 250 60.4
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.6e-72 275.8 338 47.9
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.8e-68 263.8 215 64.7
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 4.1e-68 262.7 350 42.3
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 4.5e-67 259.2 257 57.6
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 7.7e-67 258.5 159 77.4
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 2.2e-66 256.9 215 63.7
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 2.5e-65 253.4 327 46.8
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 2.5e-65 253.4 288 49.0
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 1.1e-62 244.6 220 60.9
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.4e-60 236.9 228 57.0
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.1e-60 236.1 166 71.1
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 7.7e-59 231.9 304 42.8
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 6.5e-58 228.8 178 65.2
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.1e-54 218.0 173 67.1
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.5e-54 217.6 199 58.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 6.3e-53 212.2 190 60.5
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.4e-52 210.3 169 64.5
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.0e-50 204.9 204 53.9
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 2.5e-49 200.3 162 65.4
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.7e-48 196.1 172 55.8
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 2.2e-45 187.2 155 63.9
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-43 181.0 159 58.5
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 6.5e-42 175.6 119 69.7
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 6.5e-42 175.6 215 46.0
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 1.9e-41 174.1 284 39.8
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 3.2e-41 173.3 101 81.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 5.5e-41 172.6 211 46.0
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.6e-40 171.0 195 52.3
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.7e-40 169.5 183 52.5
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.4e-39 167.9 150 59.3
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 6.8e-39 165.6 283 34.6
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 2.2e-37 160.6 166 51.2
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 4.1e-36 156.4 170 56.5
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-35 154.5 174 47.1
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.1e-33 148.3 102 65.7
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 7.2e-33 145.6 351 34.5
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.0e-31 139.8 154 47.4
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.4e-30 136.7 173 52.6
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.4e-30 136.3 78 76.9
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.8e-29 133.7 223 38.1
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.7e-29 133.3 148 50.0
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-27 128.3 146 45.9
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.5e-27 126.7 70 85.7
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 5.6e-25 119.4 141 47.5
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 7.2e-25 119.0 102 56.9
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.6e-19 101.3 52 84.6
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 4.6e-19 99.8 148 43.2
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 3.1e-15 87.0 64 70.3
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 5.2e-15 86.3 158 39.9
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.2e-14 85.1 55 70.9
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 7.5e-14 82.4 121 38.8
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 2.9e-13 80.5 152 36.2
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 6.4e-13 79.3 145 36.6
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 4.1e-12 76.6 43 86.0
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.1e-12 76.6 46 71.7
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.4e-12 76.3 144 36.1
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 2.8e-08 63.9 48 64.6
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.1e-07 62.0 41 75.6


User provided reference genes

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