Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z989LG Arachis hypogaea HOM05D000278 ORTHO05D018501 7.1e-40 166.8 82 100.0
arahy.Tifrunner.gnm1.ann1.SZ7KHE Arachis hypogaea HOM05D000278 ORTHO05D018501 8.1e-28 126.7 85 77.6
Medtr8g088270 Medicago truncatula HOM05D000278 ORTHO05D005056 8.1e-28 126.7 85 78.8
arahy.Tifrunner.gnm1.ann1.BNVP1M Arachis hypogaea HOM05D000278 ORTHO05D018501 1.8e-27 125.6 87 77.0
Lj4g0002579 Lotus japonicus HOM05D000278 ORTHO05D005056 1.8e-27 125.6 85 76.5
VMungo0251G0924 Vigna mungo HOM05D000278 ORTHO05D005056 2.4e-27 125.2 85 76.5
Phvul.002G245800 Phaseolus vulgaris HOM05D000278 ORTHO05D005056 5.3e-27 124.0 85 75.3
Actinidia33488 Actinidia chinensis HOM05D000278 ORTHO05D005056 6.9e-27 123.6 85 75.3
Lalb_Chr12g0204691 Lupinus albus HOM05D000278 ORTHO05D005056 6.9e-27 123.6 85 76.5
Ca_17857_v3 Cicer arietinum L. HOM05D000278 ORTHO05D005056 9.0e-27 123.2 85 75.3
Psat7g065040 Pisum sativum HOM05D000278 ORTHO05D005056 9.0e-27 123.2 85 75.3
TWI14G0716 Tripterygium wilfordii HOM05D000278 ORTHO05D005056 9.0e-27 123.2 85 74.1
Actinidia12666 Actinidia chinensis HOM05D000278 ORTHO05D005056 1.5e-26 122.5 85 74.1
QL04p035809 Quercus lobata HOM05D000278 ORTHO05D005056 1.5e-26 122.5 85 72.9
vmacro21041 Vaccinium macrocarpon HOM05D000278 ORTHO05D005056 1.5e-26 122.5 85 74.1
MSTRG.17153 Avicennia marina HOM05D000278 ORTHO05D005056 2.6e-26 121.7 85 74.1
COL.COLO4_31194 Corchorus olitorius HOM05D000278 ORTHO05D005056 2.6e-26 121.7 85 74.1
CsaV3_2G010520 Cucumis sativus L. HOM05D000278 ORTHO05D005056 2.6e-26 121.7 85 72.9
Glyma.05G165500 Glycine max HOM05D000278 ORTHO05D005056 2.6e-26 121.7 85 75.3
Glyma.08G123100 Glycine max HOM05D000278 ORTHO05D005056 2.6e-26 121.7 85 75.3
Gohir.A10G145900 Gossypium hirsutum HOM05D000278 ORTHO05D005056 2.6e-26 121.7 85 75.3
Atru.chr11.1568 Acer truncatum HOM05D000278 ORTHO05D005056 3.4e-26 121.3 85 72.9
Atru.chr5.215 Acer truncatum HOM05D000278 ORTHO05D005056 3.4e-26 121.3 85 72.9
ClCG10G012080 Citrullus lanatus HOM05D000278 ORTHO05D005056 4.5e-26 120.9 85 71.8
ClCG11G009900 Citrullus lanatus HOM05D000278 ORTHO05D005056 4.5e-26 120.9 85 71.8
Lalb_Chr13g0295521 Lupinus albus HOM05D000278 ORTHO05D005056 4.5e-26 120.9 85 74.1
Thecc.01G386100 Theobroma cacao HOM05D000278 ORTHO05D005056 4.5e-26 120.9 85 74.1
Aa31LG8G6840 Aethionema arabicum HOM05D000278 ORTHO05D005056 5.8e-26 120.6 85 72.9
MELO3C008567.2 Cucumis melo HOM05D000278 ORTHO05D005056 5.8e-26 120.6 85 71.8
Gohir.D10G121200 Gossypium hirsutum HOM05D000278 ORTHO05D005056 5.8e-26 120.6 85 74.1
Gorai.011G133200 Gossypium raimondii HOM05D000278 ORTHO05D005056 5.8e-26 120.6 85 74.1
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 5.8e-26 120.6 85 72.9
MSTRG.28169 Avicennia marina HOM05D000278 ORTHO05D005056 7.6e-26 120.2 85 72.9
Oeu064569.1 Olea europaea HOM05D000278 ORTHO05D005056 7.6e-26 120.2 85 72.9
SalBow5G3250 Salvia bowleyana HOM05D000278 ORTHO05D005056 7.6e-26 120.2 85 72.9
THA.LOC104817211 Tarenaya hassleriana HOM05D000278 ORTHO05D005056 7.6e-26 120.2 85 71.8
Cpa.g.sc477.1 Carica papaya HOM05D000278 ORTHO05D005056 9.9e-26 119.8 85 71.8
Rhsim01G0136000 Rhododendron simsii HOM05D000278 ORTHO05D005056 9.9e-26 119.8 85 72.9
CiPaw.13G031000 Carya illinoinensis HOM05D000278 ORTHO05D005056 1.3e-25 119.4 85 71.8
MD04G1052300 Malus domestica HOM05D000278 ORTHO05D005056 1.3e-25 119.4 85 72.9
THA.LOC104802476 Tarenaya hassleriana HOM05D000278 ORTHO05D005056 1.3e-25 119.4 85 71.8
Prupe.5G058100 Prunus persica HOM05D000278 ORTHO05D005056 1.7e-25 119.0 85 71.8
CSS0025739 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 2.2e-25 118.6 85 72.9
CSS0041160 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 2.2e-25 118.6 85 72.9
DCAR_015863 Daucus carota HOM05D000278 ORTHO05D005056 2.2e-25 118.6 85 70.6
QL07p017267 Quercus lobata HOM05D000278 ORTHO05D005056 2.2e-25 118.6 85 71.8
Cfa013785 Carpinus fangiana HOM05D000278 ORTHO05D005056 2.9e-25 118.2 85 69.4
Migut.B01576 Erythranthe guttata HOM05D000278 ORTHO05D005056 2.9e-25 118.2 85 71.8
Eucgr.I00662 Eucalyptus grandis HOM05D000278 ORTHO05D005056 2.9e-25 118.2 85 71.8
AT3G20050 Arabidopsis thaliana HOM05D000278 ORTHO05D005056 3.8e-25 117.9 85 71.8
Carub.0003s1997 Capsella rubella HOM05D000278 ORTHO05D005056 3.8e-25 117.9 85 71.8
Cc02_g24590 Coffea canephora HOM05D000278 ORTHO05D005056 3.8e-25 117.9 85 71.8
Duzib212G0780 Durio zibethinus HOM05D000278 ORTHO05D005056 3.8e-25 117.9 85 74.1
MD06G1047900 Malus domestica HOM05D000278 ORTHO05D005056 3.8e-25 117.9 85 71.8
Sed0018244 Sechium edule HOM05D000278 ORTHO05D005056 3.8e-25 117.9 85 70.6
CANSAT11G0994 Cannabis sativa HOM05D000278 ORTHO05D005056 4.9e-25 117.5 85 70.6
MBI12_g29752_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D005056 4.9e-25 117.5 85 71.8
Manes.05G050400 Manihot esculenta HOM05D000278 ORTHO05D005056 4.9e-25 117.5 85 70.6
SGA_v2.0_scaffold153G36956 Striga asiatica HOM05D000278 ORTHO05D005056 4.9e-25 117.5 85 71.8
GSVIVG01018213001 Vitis vinifera HOM05D000278 ORTHO05D005056 4.9e-25 117.5 85 70.6
Oeu000041.1 Olea europaea HOM05D000278 ORTHO05D005056 6.4e-25 117.1 85 70.6
RcHm_v2.0_Chr7g0205331 Rosa chinensis HOM05D000278 ORTHO05D005056 6.4e-25 117.1 85 70.6
BcaB04g19077 Brassica carinata HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
BcaB04g20669 Brassica carinata HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
BcaC09g48960 Brassica carinata HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
A01p34600 Brassica napus HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
C01p44050 Brassica napus HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
BolC1t04366H Brassica oleracea HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
BraA01t03554Z Brassica rapa HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
Thhalv10020463m.g Eutrema salsugineum HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
Nitab4.5_0006820g0010 Nicotiana tabacum HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
PGR004G1930 Punica granatum HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
Sp3g18080 Schrenkiella parvula HOM05D000278 ORTHO05D005056 8.4e-25 116.7 85 70.6
Aqoxy5G03860 Aquilegia oxysepala HOM05D000278 ORTHO05D005056 1.1e-24 116.3 85 69.4
CARHR095580 Cardamine hirsuta HOM05D000278 ORTHO05D005056 1.1e-24 116.3 85 70.6
Haze_02727 Corylus avellana HOM05D000278 ORTHO05D005056 1.1e-24 116.3 85 69.4
TWI59G0197 Tripterygium wilfordii HOM05D000278 ORTHO05D005056 1.1e-24 116.3 85 69.4
Dinv28581 Davidia involucrata HOM05D000278 ORTHO05D005056 1.4e-24 115.9 85 69.4
Solyc01g090750.3 Solanum lycopersicum HOM05D000278 ORTHO05D005056 1.4e-24 115.9 85 69.4
Sopen01g036480 Solanum pennellii HOM05D000278 ORTHO05D005056 1.4e-24 115.9 85 69.4
PGSC0003DMG400026026 Solanum tuberosum HOM05D000278 ORTHO05D005056 1.4e-24 115.9 85 69.4
TAR636G0359 Trochodendron aralioides HOM05D000278 ORTHO05D005056 1.4e-24 115.9 85 69.4
BcaB06g26075 Brassica carinata HOM05D000278 ORTHO05D005056 1.9e-24 115.5 85 69.4
BcaC05g28366 Brassica carinata HOM05D000278 ORTHO05D005056 1.9e-24 115.5 85 69.4
A05p29050 Brassica napus HOM05D000278 ORTHO05D005056 1.9e-24 115.5 85 69.4
BolC5t33171H Brassica oleracea HOM05D000278 ORTHO05D005056 1.9e-24 115.5 85 69.4
BraA05t21789Z Brassica rapa HOM05D000278 ORTHO05D005056 1.9e-24 115.5 85 69.4
Ciclev10019588m.g Citrus clementina HOM05D000278 ORTHO05D005056 1.9e-24 115.5 85 71.8
AL3G33730 Arabidopsis lyrata HOM05D000278 ORTHO05D005056 2.4e-24 115.2 85 70.6
FAN13G2296 Fragaria x ananassa HOM05D000278 ORTHO05D005056 2.4e-24 115.2 85 70.6
HanXRQChr09g0251951 Helianthus annuus HOM05D000278 ORTHO05D005056 2.4e-24 115.2 85 67.1
HanXRQChr12g0383091 Helianthus annuus HOM05D000278 ORTHO05D005056 2.4e-24 115.2 85 67.1
HanXRQChr16g0527361 Helianthus annuus HOM05D000278 ORTHO05D005056 2.4e-24 115.2 85 67.1
TAR374G0041 Trochodendron aralioides HOM05D000278 ORTHO05D005056 3.2e-24 114.8 85 68.2
BcaC01g03587 Brassica carinata HOM05D000278 ORTHO05D005056 4.2e-24 114.4 85 69.4
A03p41540 Brassica napus HOM05D000278 ORTHO05D005056 4.2e-24 114.4 85 69.4
C03p50870 Brassica napus HOM05D000278 ORTHO05D005056 4.2e-24 114.4 85 69.4
BolC3t17371H Brassica oleracea HOM05D000278 ORTHO05D005056 4.2e-24 114.4 85 69.4
BraA03t13309Z Brassica rapa HOM05D000278 ORTHO05D005056 4.2e-24 114.4 85 69.4
Os04g0551800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D005056 4.2e-24 114.4 85 68.2
BcaC05g28368 Brassica carinata HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 68.2
C05p44480 Brassica napus HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 68.2
CAN.G899.15 Capsicum annuum HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 68.2
FvH4_5g20270 Fragaria vesca HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 69.4
FAN04G0133 Fragaria x ananassa HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 69.4
FAN08G1444 Fragaria x ananassa HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 69.4
FAN18G4092 Fragaria x ananassa HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 69.4
HPP92_003530 Vanilla planifolia HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 70.6
Zm00001eb257580 Zea mays HOM05D000278 ORTHO05D005056 5.4e-24 114.0 85 68.2
Nn4g24660 Nelumbo nucifera HOM05D000278 ORTHO05D005056 9.3e-24 113.2 85 67.1
Hma1.2p1_0432F.1_g151820 Hydrangea macrophylla HOM05D000278 ORTHO05D005056 1.2e-23 112.8 85 68.2
arahy.Tifrunner.gnm1.ann1.0EJ6SU Arachis hypogaea HOM05D000278 ORTHO05D005056 1.6e-23 112.5 113 59.3
arahy.Tifrunner.gnm1.ann1.W5WKZB Arachis hypogaea HOM05D000278 ORTHO05D005056 1.6e-23 112.5 113 59.3
Zm00001eb192630 Zea mays HOM05D000278 ORTHO05D005056 1.6e-23 112.5 85 68.2
PSO017G3652 Papaver somniferum HOM05D000278 ORTHO05D005056 2.1e-23 112.1 85 67.1
PSO478G3336 Papaver somniferum HOM05D000278 ORTHO05D005056 2.1e-23 112.1 85 67.1
PSO170G4166 Papaver somniferum HOM05D000278 ORTHO05D005056 2.7e-23 111.7 85 67.1
ECA234G2055 Erigeron canadensis HOM05D000278 ORTHO05D005056 3.5e-23 111.3 85 67.1
Lsat_1_v5_gn_4_22680 Lactuca sativa HOM05D000278 ORTHO05D005056 3.5e-23 111.3 85 65.9
Nn3g18503 Nelumbo nucifera HOM05D000278 ORTHO05D005056 3.5e-23 111.3 85 67.1
Potri.002G142700 Populus trichocarpa HOM05D000278 ORTHO05D005056 3.5e-23 111.3 85 65.9
AUR62017449 Chenopodium quinoa HOM05D000278 ORTHO05D005056 4.6e-23 110.9 85 67.1
Ah.03g136640 Amaranthus hybridus HOM05D000278 ORTHO05D005056 6.0e-23 110.5 85 64.7
Potri.014G058500 Populus trichocarpa HOM05D000278 ORTHO05D005056 6.0e-23 110.5 85 64.7
Ah.02g128680 Amaranthus hybridus HOM05D000278 ORTHO05D005056 7.9e-23 110.2 85 64.7
PSO700G0048 Papaver somniferum HOM05D000278 ORTHO05D005056 1.0e-22 109.8 85 67.1
Sabra14G0042700 Salix brachista HOM05D000278 ORTHO05D005056 1.0e-22 109.8 85 62.4
vmacro13458 Vaccinium macrocarpon HOM05D000278 ORTHO05D005056 1.3e-22 109.4 85 67.1
unitig_0.g1316 Utricularia gibba HOM05D000278 ORTHO05D005056 1.8e-22 109.0 85 67.1
AUR62032517 Chenopodium quinoa HOM05D000278 ORTHO05D005056 2.3e-22 108.6 85 65.9
Sc07g0003410 Simmondsia chinensis HOM05D000278 ORTHO05D005056 2.3e-22 108.6 85 64.7
Dinv06562 Davidia involucrata HOM05D000278 ORTHO05D005056 3.0e-22 108.2 85 65.9
Lsat_1_v5_gn_8_34780 Lactuca sativa HOM05D000278 ORTHO05D005056 5.1e-22 107.5 85 63.5
EL10Ac6g13920 Beta vulgaris HOM05D000278 ORTHO05D005056 8.7e-22 106.7 85 62.4
CDE12G0415 Ceratophyllum demersum HOM05D000278 ORTHO05D005056 8.7e-22 106.7 85 64.7
ATR0317G001 Amborella trichopoda HOM05D000278 ORTHO05D005056 4.3e-21 104.4 85 63.5
CSS0004862 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 7.4e-21 103.6 80 70.0
SMO353G0303 Selaginella moellendorffii HOM05D000278 ORTHO05D005056 1.4e-19 99.4 85 60.0
Mapoly0099s0028 Marchantia polymorpha HOM05D000278 ORTHO05D005056 4.0e-19 97.8 85 61.2
AagrBONN_evm.TU.Sc2ySwM_344.248 Anthoceros agrestis HOM05D000278 ORTHO05D005056 1.2e-18 96.3 85 60.0
arahy.Tifrunner.gnm1.ann1.T2VC9X Arachis hypogaea HOM05D000278 ORTHO05D023735 2.6e-18 95.1 71 71.8
SEGI_28943 Sequoiadendron giganteum HOM05D000278 ORTHO05D005056 3.4e-18 94.7 85 55.3
Nitab4.5_0000706g0130 Nicotiana tabacum HOM05D000278 ORTHO05D005056 7.6e-18 93.6 69 69.6
CBR_g22255 Chara braunii HOM05D000278 ORTHO05D005056 1.7e-17 92.4 85 56.5
Peaxi162Scf00377g00416 Petunia axillaris HOM05D000278 ORTHO05D005056 1.7e-17 92.4 69 68.1
unitig_61.g26416 Utricularia gibba HOM05D000278 ORTHO05D005056 1.7e-17 92.4 80 60.0
Sed0016470 Sechium edule HOM05D000278 ORTHO05D031435 2.2e-17 92.0 69 66.7
Pp3c11_2110 Physcomitrium patens HOM05D000278 ORTHO05D005056 2.9e-17 91.7 85 55.3
SalBow5G0392 Salvia bowleyana HOM05D000278 ORTHO05D005056 2.9e-17 91.7 69 68.1
Hund12917 Selenicereus undatus HOM05D000278 ORTHO05D005056 2.9e-17 91.7 69 66.7
Hund27942 Selenicereus undatus HOM05D000278 ORTHO05D005056 2.9e-17 91.7 69 66.7
Pp3c1_900 Physcomitrium patens HOM05D000278 ORTHO05D005056 3.8e-17 91.3 85 56.5
Pp3c7_24640 Physcomitrium patens HOM05D000278 ORTHO05D005056 8.4e-17 90.1 85 55.3
Lalb_Chr07g0185991 Lupinus albus HOM05D000278 ORTHO05D023735 2.7e-15 85.1 60 73.3
Duzib128G0144 Durio zibethinus HOM05D000278 ORTHO05D005056 3.5e-15 84.7 69 65.2
arahy.Tifrunner.gnm1.ann1.XJ5RFT Arachis hypogaea HOM05D000278 ORTHO05D023735 1.0e-14 83.2 61 68.9
A10p09500 Brassica napus HOM05D002092 ORTHO05D018501 3.0e-14 81.6 69 62.3
BraA10t43025Z Brassica rapa HOM05D002092 ORTHO05D018501 3.0e-14 81.6 69 62.3
Cc02_g24240 Coffea canephora HOM05D000278 ORTHO05D005056 5.1e-14 80.9 60 66.7
PRCOL_00000179 Prasinoderma coloniale HOM05D000278 ORTHO05D005056 1.5e-13 79.3 85 49.4
Medtr8g010750 Medicago truncatula HOM05D000278 ORTHO05D005056 1.9e-13 79.0 106 48.1
C06p39650 Brassica napus HOM05D002092 ORTHO05D018501 2.5e-13 78.6 69 60.9
BcaC08g46066 Brassica carinata HOM05D002092 ORTHO05D018501 5.7e-13 77.4 69 59.4
Cre10.g439100 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D005056 7.4e-13 77.0 89 50.6
MCO11G383 Micromonas commoda HOM05D000278 ORTHO05D005056 3.7e-12 74.7 85 49.4
Actinidia22772 Actinidia chinensis HOM05D000278 ORTHO05D005056 5.3e-11 70.9 38 81.6
Actinidia22827 Actinidia chinensis HOM05D000278 ORTHO05D005056 5.3e-11 70.9 38 81.6
CDE04G3663 Ceratophyllum demersum HOM05D000278 ORTHO05D005056 1.7e-09 65.9 68 51.5
CSS0015664 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005056 2.5e-08 62.0 84 45.2
Haze_26105 Corylus avellana HOM05D000278 ORTHO05D005056 5.5e-08 60.8 85 41.2


User provided reference genes

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