Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 3.7e-94 348.6 233 100.0
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 1.4e-40 170.6 133 64.7
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 1.2e-39 167.5 139 65.5
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 2.0e-39 166.8 142 64.1
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 3.4e-39 166.0 130 66.2
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 5.9e-39 165.2 127 66.9
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 7.6e-39 164.9 126 65.9
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 1.7e-38 163.7 135 65.9
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 1.7e-38 163.7 138 68.8
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 2.2e-38 163.3 124 67.7
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 2.9e-38 162.9 149 67.8
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 3.8e-38 162.5 137 64.2
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 3.8e-38 162.5 145 67.6
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 3.8e-38 162.5 138 69.6
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 5.0e-38 162.2 138 63.8
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 1.4e-37 160.6 145 62.1
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 1.4e-37 160.6 145 62.1
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 1.9e-37 160.2 127 65.4
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 3.2e-37 159.5 145 62.1
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 5.5e-37 158.7 129 66.7
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 7.2e-37 158.3 136 58.8
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 1.2e-36 157.5 138 66.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 3.6e-36 156.0 143 62.9
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 1.0e-35 154.5 126 63.5
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 1.3e-35 154.1 138 63.0
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 1.3e-35 154.1 138 63.0
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 1.3e-35 154.1 126 65.1
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 3.0e-35 152.9 140 59.3
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 3.0e-35 152.9 136 61.0
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 3.9e-35 152.5 140 57.9
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 3.9e-35 152.5 125 65.6
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 5.1e-35 152.1 125 64.0
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 5.1e-35 152.1 138 60.9
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 5.1e-35 152.1 138 60.9
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 5.1e-35 152.1 125 63.2
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 5.1e-35 152.1 133 63.9
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 6.7e-35 151.8 133 63.2
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 8.7e-35 151.4 140 64.3
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 1.1e-34 151.0 133 63.9
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 1.1e-34 151.0 136 57.4
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 1.5e-34 150.6 140 58.6
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 1.5e-34 150.6 140 58.6
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 1.5e-34 150.6 135 63.0
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 1.9e-34 150.2 133 59.4
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 1.9e-34 150.2 133 60.2
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.5e-34 149.8 132 59.8
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 3.3e-34 149.4 138 60.9
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 3.3e-34 149.4 131 60.3
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 4.3e-34 149.1 133 63.2
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 9.7e-34 147.9 128 60.9
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 1.3e-33 147.5 132 58.3
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.7e-33 147.1 137 62.0
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 2.2e-33 146.7 135 60.7
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 2.2e-33 146.7 139 56.1
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 2.2e-33 146.7 146 56.8
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 2.8e-33 146.4 134 64.2
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 3.7e-33 146.0 126 57.9
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 4.8e-33 145.6 132 56.8
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 8.2e-33 144.8 127 59.8
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 2.4e-32 143.3 138 58.7
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 2.4e-32 143.3 138 58.7
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 3.1e-32 142.9 126 64.3
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 4.1e-32 142.5 136 59.6
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 5.3e-32 142.1 135 57.0
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 5.3e-32 142.1 136 57.4
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 1.5e-31 140.6 135 59.3
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 5.9e-31 138.7 128 61.7
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 5.9e-31 138.7 138 55.8
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 1.0e-30 137.9 134 55.2
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 1.7e-30 137.1 123 56.9
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 1.7e-30 137.1 158 51.3
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.2e-30 136.7 114 62.3
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 2.2e-30 136.7 119 66.4
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 3.8e-30 136.0 125 59.2
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 3.8e-30 136.0 139 56.8
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 6.5e-30 135.2 127 61.4
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.9e-29 133.7 121 57.9
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 5.5e-29 132.1 121 57.0
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.5e-29 132.1 150 51.3
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 9.4e-29 131.3 143 53.1
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 9.4e-29 131.3 140 52.9
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 9.4e-29 131.3 106 62.3
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 2.1e-28 130.2 120 56.7
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 7.9e-28 128.3 138 49.3
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 1.0e-27 127.9 106 59.4
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 1.5e-26 124.0 135 53.3
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 2.0e-26 123.6 146 47.9
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 2.6e-26 123.2 105 61.9
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 2.2e-25 120.2 110 57.3
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 4.8e-25 119.0 134 49.3
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 6.3e-25 118.6 110 56.4
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 4.1e-24 115.9 119 54.6
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 5.3e-24 115.5 123 47.2
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 1.2e-23 114.4 121 50.4
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 2.7e-20 103.2 125 47.2
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 5.7e-18 95.5 135 41.5
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 2.8e-17 93.2 118 44.1
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 2.7e-12 76.6 82 46.3
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.0e-10 70.5 50 70.0
Zm00001eb197620 Zea mays HOM05D002489 ORTHO05D002653 7.7e-07 58.5 75 41.3
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 1.7e-06 57.4 88 34.1
Zm00001eb113710 Zea mays HOM05D002489 ORTHO05D002653 1.7e-06 57.4 75 40.0
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 2.9e-06 56.6 85 32.9
C01p52760 Brassica napus HOM05D002489 ORTHO05D002653 2.9e-06 56.6 66 42.4
BolC1t05213H Brassica oleracea HOM05D002489 ORTHO05D002653 2.9e-06 56.6 66 42.4
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 2.9e-06 56.6 83 37.3
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 2.9e-06 56.6 64 39.1
Os11g0544700 Oryza sativa ssp. japonica HOM05D002489 ORTHO05D002653 3.8e-06 56.2 75 38.7
HPP92_002807 Vanilla planifolia HOM05D007500 ORTHO05D009197 3.8e-06 56.2 81 46.9
Aa31sc1276G10 Aethionema arabicum HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
BcaB04g18680 Brassica carinata HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
BcaB04g21076 Brassica carinata HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
BcaC09g48244 Brassica carinata HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
A03p37630 Brassica napus HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
BNapus_Darmor_BZH_scaffold_149p00010 Brassica napus HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
C03p45620 Brassica napus HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
BolC3t16839H Brassica oleracea HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
BraA01t04134Z Brassica rapa HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
BraA03t12917Z Brassica rapa HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
Thhalv10021246m.g Eutrema salsugineum HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.0e-06 55.8 151 29.1
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.0e-06 55.8 151 29.1
Sp3g10610 Schrenkiella parvula HOM05D002489 ORTHO05D002653 5.0e-06 55.8 66 40.9
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 5.0e-06 55.8 89 31.5
HPP92_002225 Vanilla planifolia HOM05D002489 ORTHO05D002653 5.0e-06 55.8 75 38.7
GSVIVG01036581001 Vitis vinifera HOM05D002489 ORTHO05D002653 5.0e-06 55.8 75 38.7
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 6.5e-06 55.5 79 35.4
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 6.5e-06 55.5 96 35.4
TAR622G0989 Trochodendron aralioides HOM05D000789 ORTHO05D000897 8.5e-06 55.1 90 36.7


User provided reference genes

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