Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.2e-107 392.5 227 100.0
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.3e-86 323.6 191 99.5
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 8.4e-83 310.8 191 95.8
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 5.4e-82 308.1 191 94.2
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.2e-81 307.0 191 94.2
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.0e-80 303.9 191 93.7
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.3e-80 303.5 191 93.7
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 3.9e-80 302.0 191 93.2
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 5.1e-80 301.6 192 91.7
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 1.3e-78 297.0 191 90.6
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.1e-78 296.2 191 90.6
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 6.9e-77 291.2 191 91.1
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 9.0e-77 290.8 197 88.3
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.2e-76 290.4 191 91.1
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.5e-76 290.0 191 89.0
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.6e-76 289.3 191 90.1
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 3.4e-76 288.9 191 90.1
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 5.8e-76 288.1 191 88.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.7e-75 286.6 191 89.5
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.8e-75 285.4 196 87.2
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 8.4e-75 284.3 191 89.5
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.9e-74 283.1 191 88.5
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 4.2e-74 282.0 190 90.0
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 5.5e-74 281.6 191 89.5
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 5.5e-74 281.6 191 89.0
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 9.3e-74 280.8 191 89.0
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 9.3e-74 280.8 191 89.5
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 9.3e-74 280.8 190 88.4
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.6e-73 280.0 191 87.4
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.6e-73 280.0 192 88.0
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.6e-73 280.0 191 87.4
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.6e-73 280.0 192 88.0
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.6e-73 280.0 190 87.4
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.1e-73 279.6 191 87.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.7e-73 279.3 197 86.3
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 3.5e-73 278.9 191 88.0
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.5e-73 278.9 191 88.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 4.6e-73 278.5 190 88.4
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-73 278.5 192 87.5
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 6.0e-73 278.1 193 88.1
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 7.9e-73 277.7 191 88.5
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.0e-72 277.3 204 84.3
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.0e-72 277.3 191 87.4
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.0e-72 277.3 193 87.6
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 1.3e-72 276.9 195 85.6
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.3e-72 276.9 191 87.4
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.3e-72 276.2 195 86.2
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 2.3e-72 276.2 191 88.0
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 3.9e-72 275.4 191 88.0
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.9e-72 275.4 193 87.6
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.1e-72 275.0 193 87.6
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 5.1e-72 275.0 190 87.4
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 8.7e-72 274.2 194 85.6
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 2.5e-71 272.7 197 85.3
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 4.3e-71 271.9 197 84.3
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 5.7e-71 271.6 197 86.3
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.3e-70 270.4 194 85.1
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.6e-70 270.0 202 83.2
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 2.1e-70 269.6 191 87.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.8e-70 269.2 196 84.7
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.7e-70 268.9 201 83.6
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 3.7e-70 268.9 201 83.6
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 4.8e-70 268.5 204 81.9
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 6.2e-70 268.1 197 84.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.2e-70 267.7 198 85.4
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 8.2e-70 267.7 197 83.8
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 8.2e-70 267.7 197 83.8
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 8.2e-70 267.7 191 84.8
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.1e-69 267.3 193 85.0
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.1e-69 267.3 198 83.8
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.4e-69 266.9 200 83.0
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.8e-69 266.5 198 85.4
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.8e-69 266.5 198 85.4
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.8e-69 266.5 198 85.4
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.8e-69 266.5 191 84.8
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.4e-69 266.2 192 85.9
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.4e-69 266.2 192 85.9
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.4e-69 266.2 199 82.4
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.1e-69 265.8 198 83.3
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 4.1e-69 265.4 191 85.3
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 4.1e-69 265.4 197 83.2
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 4.1e-69 265.4 191 85.9
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 4.1e-69 265.4 196 82.7
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 6.9e-69 264.6 193 85.0
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 6.9e-69 264.6 193 84.5
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 6.9e-69 264.6 191 83.8
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 6.9e-69 264.6 191 83.8
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 9.0e-69 264.2 201 82.6
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 9.0e-69 264.2 197 82.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 9.0e-69 264.2 187 85.6
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-68 263.8 191 83.2
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-68 263.8 191 83.2
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.2e-68 263.8 191 84.3
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.5e-68 263.5 191 83.8
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-68 263.1 191 82.7
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-68 263.1 191 84.8
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 2.0e-68 263.1 191 82.7
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.0e-68 263.1 191 83.2
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 2.6e-68 262.7 191 83.2
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 2.6e-68 262.7 191 83.2
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 2.6e-68 262.7 191 83.2
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.4e-68 262.3 191 83.2
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 4.5e-68 261.9 191 82.7
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 4.5e-68 261.9 191 82.7
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 4.5e-68 261.9 191 82.7
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 4.5e-68 261.9 200 82.0
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 4.5e-68 261.9 191 82.7
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 5.8e-68 261.5 201 84.1
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.0e-67 260.8 200 81.0
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.0e-67 260.8 191 82.7
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.7e-67 260.0 191 82.7
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 5.0e-67 258.5 191 81.7
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 5.0e-67 258.5 198 81.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 6.5e-67 258.1 191 81.7
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 6.5e-67 258.1 191 81.7
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.4e-66 256.9 192 81.2
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 2.5e-66 256.1 196 79.6
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.3e-64 250.4 154 96.8
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 3.0e-64 249.2 237 70.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 8.7e-64 247.7 170 86.5
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.1e-63 247.3 192 80.2
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 3.3e-63 245.7 171 87.7
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 3.3e-63 245.7 154 94.8
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 7.4e-63 244.6 195 80.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 9.7e-63 244.2 173 85.0
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.6e-62 243.4 197 79.2
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.6e-62 243.4 185 83.8
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.2e-62 243.0 172 86.0
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.8e-62 242.7 177 85.3
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.4e-61 239.6 155 93.5
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.1e-61 239.2 247 56.3
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 3.1e-61 239.2 192 79.2
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.4e-60 235.7 147 95.9
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.9e-56 222.2 137 81.8
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 6.7e-56 221.5 169 82.8
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 6.7e-56 221.5 153 86.9
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.5e-55 220.3 136 97.1
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.5e-55 220.3 154 75.3
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.7e-54 216.9 191 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.2e-52 210.7 150 86.0
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.2e-51 206.5 191 62.8
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.2e-51 206.5 155 81.9
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 3.8e-51 205.7 154 81.8
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 9.4e-50 201.1 137 88.3
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.6e-49 200.3 114 84.2
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 2.3e-48 196.4 134 87.3
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 6.7e-48 194.9 132 89.4
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 2.6e-47 193.0 161 66.5
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.4e-47 191.4 149 79.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.1e-45 185.7 148 68.2
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 9.1e-45 184.5 174 69.0
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.6e-44 183.0 116 98.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.6e-44 183.0 116 92.2
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.2e-41 174.1 111 97.3
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 8.0e-41 171.4 146 77.4
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.0e-40 171.0 182 63.7
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.7e-40 168.3 206 53.9
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 8.8e-40 167.9 160 68.8
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.4e-37 160.6 130 79.2
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 8.5e-35 151.4 123 66.7
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 4.7e-33 145.6 102 94.1
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 8.0e-33 144.8 127 61.4
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.7e-17 92.4 69 69.6
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 1.2e-09 67.8 193 33.2
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 5.2e-08 62.4 61 54.1
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.5e-07 60.8 61 57.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 9.8e-07 58.2 53 47.2


User provided reference genes

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