Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z8UJG3 Arachis hypogaea HOM05D004181 ORTHO05D005610 4.2e-27 124.0 65 100.0
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 4.6e-26 120.6 64 96.9
arahy.Tifrunner.gnm1.ann1.7XC003 Arachis hypogaea HOM05D000722 ORTHO05D005610 5.1e-25 117.1 64 95.3
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 1.5e-24 115.5 64 90.6
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 1.6e-23 112.1 64 87.5
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 1.6e-23 112.1 64 87.5
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 1.6e-23 112.1 64 87.5
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 1.6e-23 112.1 64 87.5
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 2.1e-23 111.7 64 87.5
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 6.2e-23 110.2 64 84.4
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 1.4e-22 109.0 64 85.9
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 3.1e-22 107.8 64 82.8
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 3.1e-22 107.8 64 82.8
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 3.1e-22 107.8 64 82.8
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 4.0e-22 107.5 64 82.8
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 6.9e-22 106.7 64 84.4
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 1.2e-21 105.9 64 82.8
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 1.5e-21 105.5 64 82.8
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 2.0e-21 105.1 64 79.7
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 2.6e-21 104.8 64 81.2
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 2.6e-21 104.8 64 81.2
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 2.6e-21 104.8 64 81.2
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 3.4e-21 104.4 64 82.8
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 4.5e-21 104.0 64 81.2
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 4.5e-21 104.0 64 81.2
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 5.8e-21 103.6 64 79.7
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 1.0e-20 102.8 64 79.7
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 1.0e-20 102.8 63 84.1
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 1.3e-20 102.4 64 79.7
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 1.3e-20 102.4 64 78.1
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 1.3e-20 102.4 63 79.4
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 1.7e-20 102.1 63 81.0
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 4.9e-20 100.5 64 75.0
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 6.5e-20 100.1 59 84.7
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 1.1e-19 99.4 64 73.4
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.4e-19 99.0 63 77.8
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.4e-19 99.0 63 77.8
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 1.4e-19 99.0 60 81.7
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 1.9e-19 98.6 64 73.4
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 1.9e-19 98.6 63 77.8
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 2.5e-19 98.2 64 73.4
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 2.5e-19 98.2 63 76.2
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 3.2e-19 97.8 63 76.2
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 4.2e-19 97.4 64 75.0
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 4.2e-19 97.4 64 76.6
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 4.2e-19 97.4 64 76.6
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 7.1e-19 96.7 63 76.2
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.1e-19 96.7 63 76.2
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 7.1e-19 96.7 63 76.2
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 9.3e-19 96.3 64 73.4
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 1.6e-18 95.5 64 73.4
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 2.1e-18 95.1 64 73.4
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 2.1e-18 95.1 64 71.9
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 2.7e-18 94.7 64 71.9
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 3.5e-18 94.4 63 74.6
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 3.5e-18 94.4 63 74.6
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 3.5e-18 94.4 63 74.6
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 3.5e-18 94.4 64 71.9
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 4.6e-18 94.0 64 71.9
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 6.0e-18 93.6 67 74.6
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 6.0e-18 93.6 64 71.9
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 6.0e-18 93.6 64 67.2
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 1.0e-17 92.8 64 75.0
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 1.0e-17 92.8 64 73.4
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 1.3e-17 92.4 63 74.6
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 1.3e-17 92.4 64 71.9
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.3e-17 92.4 64 71.9
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.3e-17 92.4 64 71.9
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.3e-17 92.4 64 71.9
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.3e-17 92.4 64 71.9
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 1.8e-17 92.0 59 78.0
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 1.8e-17 92.0 59 78.0
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 1.8e-17 92.0 59 78.0
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 2.3e-17 91.7 59 76.3
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 3.9e-17 90.9 63 69.8
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 3.9e-17 90.9 63 69.8
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 5.1e-17 90.5 59 74.6
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 5.1e-17 90.5 59 74.6
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 5.1e-17 90.5 59 74.6
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.1e-17 90.5 63 71.4
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 6.7e-17 90.1 64 67.2
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 6.7e-17 90.1 64 70.3
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 8.7e-17 89.7 59 76.3
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 8.7e-17 89.7 59 76.3
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 8.7e-17 89.7 64 70.3
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 1.1e-16 89.4 64 68.8
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 1.5e-16 89.0 63 71.4
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 2.5e-16 88.2 64 65.6
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 3.3e-16 87.8 59 76.3
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 3.3e-16 87.8 63 74.6
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 4.3e-16 87.4 64 64.1
Rhsim13G0005700 Rhododendron simsii HOM05D004181 ORTHO05D005610 5.7e-16 87.0 64 65.6
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 7.4e-16 86.7 56 73.2
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 1.3e-15 85.9 64 64.1
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 1.3e-15 85.9 59 71.2
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 1.3e-15 85.9 59 71.2
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 2.8e-15 84.7 64 64.1
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 6.3e-15 83.6 54 75.9
Lalb_Chr15g0087091 Lupinus albus HOM05D004181 ORTHO05D005610 6.9e-14 80.1 43 93.0
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 1.2e-13 79.3 63 57.1
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 1.5e-13 79.0 64 60.9
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 2.0e-13 78.6 63 55.6
SMO144G0053 Selaginella moellendorffii HOM05D004181 ORTHO05D005610 1.7e-12 75.5 63 57.1
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 5.0e-12 73.9 60 56.7
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 2.5e-11 71.6 61 57.4
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 3.5e-10 67.8 60 58.3
Nitab4.5_0000242g0080 Nicotiana tabacum HOM05D004181 ORTHO05D005610 1.9e-08 62.0 36 86.1
Nitab4.5_0003641g0020 Nicotiana tabacum HOM05D004181 ORTHO05D005610 1.9e-08 62.0 36 86.1
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 2.2e-07 58.5 35 82.9
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 4.8e-07 57.4 36 77.8


User provided reference genes

Program Settings